Hb_004223_240

Information

Type -
Description -
Location Contig4223: 171467-172732
Sequence    

Annotation

kegg
ID rcu:RCOM_1597110
description ATRAD3, putative
nr
ID XP_012073835.1
description PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08239 PE=4 SV=1
Gene Ontology
ID GO:0008168
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004223_240 0.0 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
2 Hb_000617_330 0.1196393472 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
3 Hb_002890_330 0.1222943678 - - caspase, putative [Ricinus communis]
4 Hb_001289_010 0.122952757 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
5 Hb_001638_340 0.1244186974 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000692_100 0.1248657314 - - calcium-dependent protein kinase, putative [Ricinus communis]
7 Hb_001322_100 0.1268831499 - - PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera]
8 Hb_000827_020 0.1316070888 - - unnamed protein product [Coffea canephora]
9 Hb_001477_060 0.1365680633 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
10 Hb_008895_020 0.1377224114 - - Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative [Theobroma cacao]
11 Hb_001100_070 0.1378472101 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_002518_220 0.1392285975 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
13 Hb_000012_350 0.1416119026 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
14 Hb_002053_190 0.1419336382 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
15 Hb_004450_020 0.1427830305 - - serine-threonine protein kinase, putative [Ricinus communis]
16 Hb_002485_010 0.1446688246 - - PREDICTED: extensin [Jatropha curcas]
17 Hb_001794_040 0.1455636903 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
18 Hb_124677_090 0.1456197955 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000185_130 0.1464377827 - - UBX domain-containing protein 8-B, putative [Ricinus communis]
20 Hb_007441_360 0.1471957675 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]

Gene co-expression network

sample Hb_004223_240 Hb_004223_240 Hb_000617_330 Hb_000617_330 Hb_004223_240--Hb_000617_330 Hb_002890_330 Hb_002890_330 Hb_004223_240--Hb_002890_330 Hb_001289_010 Hb_001289_010 Hb_004223_240--Hb_001289_010 Hb_001638_340 Hb_001638_340 Hb_004223_240--Hb_001638_340 Hb_000692_100 Hb_000692_100 Hb_004223_240--Hb_000692_100 Hb_001322_100 Hb_001322_100 Hb_004223_240--Hb_001322_100 Hb_000617_330--Hb_001289_010 Hb_001100_070 Hb_001100_070 Hb_000617_330--Hb_001100_070 Hb_000718_060 Hb_000718_060 Hb_000617_330--Hb_000718_060 Hb_001794_040 Hb_001794_040 Hb_000617_330--Hb_001794_040 Hb_008221_200 Hb_008221_200 Hb_000617_330--Hb_008221_200 Hb_000012_350 Hb_000012_350 Hb_000617_330--Hb_000012_350 Hb_002053_190 Hb_002053_190 Hb_002890_330--Hb_002053_190 Hb_002043_070 Hb_002043_070 Hb_002890_330--Hb_002043_070 Hb_001541_210 Hb_001541_210 Hb_002890_330--Hb_001541_210 Hb_002960_030 Hb_002960_030 Hb_002890_330--Hb_002960_030 Hb_001405_170 Hb_001405_170 Hb_002890_330--Hb_001405_170 Hb_009222_040 Hb_009222_040 Hb_002890_330--Hb_009222_040 Hb_001289_010--Hb_001100_070 Hb_009393_090 Hb_009393_090 Hb_001289_010--Hb_009393_090 Hb_001289_010--Hb_000718_060 Hb_000434_060 Hb_000434_060 Hb_001289_010--Hb_000434_060 Hb_000818_090 Hb_000818_090 Hb_001289_010--Hb_000818_090 Hb_011574_020 Hb_011574_020 Hb_001638_340--Hb_011574_020 Hb_008895_020 Hb_008895_020 Hb_001638_340--Hb_008895_020 Hb_124677_090 Hb_124677_090 Hb_001638_340--Hb_124677_090 Hb_001477_060 Hb_001477_060 Hb_001638_340--Hb_001477_060 Hb_001638_340--Hb_000012_350 Hb_059275_010 Hb_059275_010 Hb_001638_340--Hb_059275_010 Hb_000482_120 Hb_000482_120 Hb_000692_100--Hb_000482_120 Hb_001054_040 Hb_001054_040 Hb_000692_100--Hb_001054_040 Hb_000692_100--Hb_000617_330 Hb_006570_090 Hb_006570_090 Hb_000692_100--Hb_006570_090 Hb_001318_100 Hb_001318_100 Hb_000692_100--Hb_001318_100 Hb_001322_100--Hb_000692_100 Hb_001951_190 Hb_001951_190 Hb_001322_100--Hb_001951_190 Hb_001322_100--Hb_002890_330 Hb_000827_020 Hb_000827_020 Hb_001322_100--Hb_000827_020 Hb_003702_070 Hb_003702_070 Hb_001322_100--Hb_003702_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187272 8.82514 13.5189 20.3458 1.57878 0.279443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0380654 0 0.0558516 0.683073 11.5599

CAGE analysis