Hb_001951_190

Information

Type -
Description -
Location Contig1951: 174396-175689
Sequence    

Annotation

kegg
ID pop:POPTR_0001s34420g
description hypothetical protein
nr
ID XP_011045314.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
swissprot
ID O65399
description Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana GN=At1g11820 PE=1 SV=3
trembl
ID U5GX67
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s34420g PE=4 SV=1
Gene Ontology
ID GO:0003824
description plasmodesmata callose-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19502: 173716-173888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_190 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
2 Hb_005245_140 0.1427879184 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
3 Hb_000479_060 0.1442167107 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
4 Hb_003266_090 0.1476784124 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
5 Hb_003581_050 0.1489680272 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
6 Hb_000424_030 0.1511526286 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003929_230 0.1522306787 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
8 Hb_003001_130 0.1526337746 - - conserved hypothetical protein [Ricinus communis]
9 Hb_143629_120 0.1531291712 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_000271_220 0.1537854722 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
11 Hb_001318_100 0.1552156461 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
12 Hb_004241_110 0.1552654939 - - Minor allergen Alt a, putative [Ricinus communis]
13 Hb_000069_690 0.1559993092 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF6 [Jatropha curcas]
14 Hb_002518_220 0.1575662908 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
15 Hb_035995_010 0.1579510446 - - -
16 Hb_000365_280 0.1579917601 - - calcium binding protein/cast, putative [Ricinus communis]
17 Hb_000603_020 0.1593554867 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
18 Hb_000011_070 0.1593906232 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
19 Hb_001322_100 0.15967804 - - PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera]
20 Hb_000030_020 0.1606792598 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]

Gene co-expression network

sample Hb_001951_190 Hb_001951_190 Hb_005245_140 Hb_005245_140 Hb_001951_190--Hb_005245_140 Hb_000479_060 Hb_000479_060 Hb_001951_190--Hb_000479_060 Hb_003266_090 Hb_003266_090 Hb_001951_190--Hb_003266_090 Hb_003581_050 Hb_003581_050 Hb_001951_190--Hb_003581_050 Hb_000424_030 Hb_000424_030 Hb_001951_190--Hb_000424_030 Hb_003929_230 Hb_003929_230 Hb_001951_190--Hb_003929_230 Hb_000165_090 Hb_000165_090 Hb_005245_140--Hb_000165_090 Hb_091318_010 Hb_091318_010 Hb_005245_140--Hb_091318_010 Hb_004678_030 Hb_004678_030 Hb_005245_140--Hb_004678_030 Hb_000030_020 Hb_000030_020 Hb_005245_140--Hb_000030_020 Hb_010315_100 Hb_010315_100 Hb_005245_140--Hb_010315_100 Hb_002110_170 Hb_002110_170 Hb_005245_140--Hb_002110_170 Hb_000365_280 Hb_000365_280 Hb_000479_060--Hb_000365_280 Hb_000109_190 Hb_000109_190 Hb_000479_060--Hb_000109_190 Hb_001999_200 Hb_001999_200 Hb_000479_060--Hb_001999_200 Hb_005539_140 Hb_005539_140 Hb_000479_060--Hb_005539_140 Hb_002973_030 Hb_002973_030 Hb_000479_060--Hb_002973_030 Hb_081864_010 Hb_081864_010 Hb_000479_060--Hb_081864_010 Hb_002311_280 Hb_002311_280 Hb_003266_090--Hb_002311_280 Hb_022092_110 Hb_022092_110 Hb_003266_090--Hb_022092_110 Hb_001318_100 Hb_001318_100 Hb_003266_090--Hb_001318_100 Hb_003266_090--Hb_003581_050 Hb_002518_220 Hb_002518_220 Hb_003266_090--Hb_002518_220 Hb_003454_050 Hb_003454_050 Hb_003266_090--Hb_003454_050 Hb_007221_040 Hb_007221_040 Hb_003581_050--Hb_007221_040 Hb_003581_050--Hb_002518_220 Hb_007441_360 Hb_007441_360 Hb_003581_050--Hb_007441_360 Hb_010174_200 Hb_010174_200 Hb_003581_050--Hb_010174_200 Hb_007257_070 Hb_007257_070 Hb_003581_050--Hb_007257_070 Hb_006829_070 Hb_006829_070 Hb_000424_030--Hb_006829_070 Hb_000603_020 Hb_000603_020 Hb_000424_030--Hb_000603_020 Hb_000271_220 Hb_000271_220 Hb_000424_030--Hb_000271_220 Hb_002217_320 Hb_002217_320 Hb_000424_030--Hb_002217_320 Hb_000622_330 Hb_000622_330 Hb_000424_030--Hb_000622_330 Hb_006925_050 Hb_006925_050 Hb_000424_030--Hb_006925_050 Hb_003001_130 Hb_003001_130 Hb_003929_230--Hb_003001_130 Hb_003929_230--Hb_001318_100 Hb_005408_100 Hb_005408_100 Hb_003929_230--Hb_005408_100 Hb_000349_200 Hb_000349_200 Hb_003929_230--Hb_000349_200 Hb_003929_230--Hb_000109_190 Hb_003929_230--Hb_000603_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.268275 2.29226 2.39317 5.23655 0.115444 0.210273
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136788 0.268886 0 0.413717 2.37252

CAGE analysis