Hb_003581_050

Information

Type transcription factor
Description TF Family: HB
Location Contig3581: 28200-30180
Sequence    

Annotation

kegg
ID rcu:RCOM_0698700
description homeobox protein, putative
nr
ID XP_012091954.1
description PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
swissprot
ID Q02283
description Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1
trembl
ID A0A067JML6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21706 PE=4 SV=1
Gene Ontology
ID GO:0003700
description homeobox-leucine zipper protein hat5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36929: 28275-29061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_050 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-54 [Jatropha curcas]
2 Hb_003266_090 0.0979451797 - - PREDICTED: basic 7S globulin 2-like [Jatropha curcas]
3 Hb_007221_040 0.1023586821 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
4 Hb_002518_220 0.1035032966 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
5 Hb_007441_360 0.1044464257 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
6 Hb_010174_200 0.1074442198 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
7 Hb_007257_070 0.1089523184 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
8 Hb_004228_070 0.1102177572 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
9 Hb_002205_150 0.1111764917 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
10 Hb_000742_130 0.1161615774 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
11 Hb_012539_100 0.1191662095 - - PREDICTED: putative proline-rich receptor-like protein kinase PERK11 [Jatropha curcas]
12 Hb_001269_240 0.1195926778 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
13 Hb_003071_050 0.1223179263 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
14 Hb_000574_230 0.1246448521 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
15 Hb_004634_030 0.124932174 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002902_040 0.1256753996 - - PREDICTED: peroxidase 51 [Jatropha curcas]
17 Hb_005643_040 0.1280467872 - - zinc finger protein, putative [Ricinus communis]
18 Hb_003454_050 0.1281319965 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
19 Hb_026050_010 0.1288915441 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_043630_030 0.1289145126 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]

Gene co-expression network

sample Hb_003581_050 Hb_003581_050 Hb_003266_090 Hb_003266_090 Hb_003581_050--Hb_003266_090 Hb_007221_040 Hb_007221_040 Hb_003581_050--Hb_007221_040 Hb_002518_220 Hb_002518_220 Hb_003581_050--Hb_002518_220 Hb_007441_360 Hb_007441_360 Hb_003581_050--Hb_007441_360 Hb_010174_200 Hb_010174_200 Hb_003581_050--Hb_010174_200 Hb_007257_070 Hb_007257_070 Hb_003581_050--Hb_007257_070 Hb_002311_280 Hb_002311_280 Hb_003266_090--Hb_002311_280 Hb_022092_110 Hb_022092_110 Hb_003266_090--Hb_022092_110 Hb_001318_100 Hb_001318_100 Hb_003266_090--Hb_001318_100 Hb_003266_090--Hb_002518_220 Hb_003454_050 Hb_003454_050 Hb_003266_090--Hb_003454_050 Hb_004228_070 Hb_004228_070 Hb_007221_040--Hb_004228_070 Hb_002205_150 Hb_002205_150 Hb_007221_040--Hb_002205_150 Hb_021576_130 Hb_021576_130 Hb_007221_040--Hb_021576_130 Hb_007221_040--Hb_003454_050 Hb_000434_060 Hb_000434_060 Hb_007221_040--Hb_000434_060 Hb_012539_100 Hb_012539_100 Hb_007221_040--Hb_012539_100 Hb_000742_130 Hb_000742_130 Hb_002518_220--Hb_000742_130 Hb_043630_030 Hb_043630_030 Hb_002518_220--Hb_043630_030 Hb_006120_210 Hb_006120_210 Hb_002518_220--Hb_006120_210 Hb_002518_220--Hb_012539_100 Hb_001269_240 Hb_001269_240 Hb_007441_360--Hb_001269_240 Hb_007441_360--Hb_010174_200 Hb_000574_230 Hb_000574_230 Hb_007441_360--Hb_000574_230 Hb_002097_130 Hb_002097_130 Hb_007441_360--Hb_002097_130 Hb_007441_360--Hb_007257_070 Hb_026050_010 Hb_026050_010 Hb_010174_200--Hb_026050_010 Hb_081864_010 Hb_081864_010 Hb_010174_200--Hb_081864_010 Hb_173107_020 Hb_173107_020 Hb_010174_200--Hb_173107_020 Hb_114733_010 Hb_114733_010 Hb_010174_200--Hb_114733_010 Hb_009771_040 Hb_009771_040 Hb_010174_200--Hb_009771_040 Hb_007257_070--Hb_000574_230 Hb_007257_070--Hb_001269_240 Hb_007257_070--Hb_026050_010 Hb_005074_010 Hb_005074_010 Hb_007257_070--Hb_005074_010 Hb_028928_020 Hb_028928_020 Hb_007257_070--Hb_028928_020 Hb_003071_050 Hb_003071_050 Hb_007257_070--Hb_003071_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301715 21.7621 22.0523 36.3663 0.0819792 0.0830325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.155461 0.917187 0.113953 4.36938 18.4484

CAGE analysis