Hb_026050_010

Information

Type -
Description -
Location Contig26050: 9296-11649
Sequence    

Annotation

kegg
ID rcu:RCOM_0916240
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002532331.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q9ZV25
description Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1
trembl
ID B9T262
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0916240 PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27165: 11364-11752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026050_010 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_009771_040 0.071768771 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
3 Hb_002250_140 0.073310343 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 6 isoform X1 [Populus euphratica]
4 Hb_000574_230 0.0860052102 - - PREDICTED: leucine-rich repeat receptor protein kinase EXS-like isoform X2 [Vitis vinifera]
5 Hb_007257_070 0.0879439403 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
6 Hb_010174_200 0.0904221627 - - PREDICTED: uncharacterized protein LOC105644743 isoform X1 [Jatropha curcas]
7 Hb_000258_230 0.092712387 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001269_240 0.0966913096 - - aquaporin NIP6.1 family protein [Populus trichocarpa]
9 Hb_173107_020 0.1009323032 - - PREDICTED: putative receptor-like protein kinase At1g80870 [Jatropha curcas]
10 Hb_000434_060 0.1077188276 desease resistance Gene Name: hmm Disease resistance protein RPM1, putative [Ricinus communis]
11 Hb_007103_020 0.1096270912 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
12 Hb_001405_170 0.1149315402 - - aspartyl protease family protein [Populus trichocarpa]
13 Hb_005074_010 0.1165549818 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
14 Hb_002168_070 0.118743438 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
15 Hb_008598_010 0.1219238674 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
16 Hb_007441_360 0.1223817496 - - PREDICTED: uncharacterized protein LOC105643270 [Jatropha curcas]
17 Hb_000270_750 0.124012998 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
18 Hb_005618_010 0.1240286976 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
19 Hb_000201_010 0.1242730683 - - unnamed protein product [Vitis vinifera]
20 Hb_000813_090 0.1260299085 - - hypothetical protein CARUB_v10019318mg [Capsella rubella]

Gene co-expression network

sample Hb_026050_010 Hb_026050_010 Hb_009771_040 Hb_009771_040 Hb_026050_010--Hb_009771_040 Hb_002250_140 Hb_002250_140 Hb_026050_010--Hb_002250_140 Hb_000574_230 Hb_000574_230 Hb_026050_010--Hb_000574_230 Hb_007257_070 Hb_007257_070 Hb_026050_010--Hb_007257_070 Hb_010174_200 Hb_010174_200 Hb_026050_010--Hb_010174_200 Hb_000258_230 Hb_000258_230 Hb_026050_010--Hb_000258_230 Hb_002168_070 Hb_002168_070 Hb_009771_040--Hb_002168_070 Hb_009771_040--Hb_002250_140 Hb_009771_040--Hb_000258_230 Hb_000434_060 Hb_000434_060 Hb_009771_040--Hb_000434_060 Hb_173107_020 Hb_173107_020 Hb_009771_040--Hb_173107_020 Hb_002250_140--Hb_173107_020 Hb_002250_140--Hb_000258_230 Hb_007103_020 Hb_007103_020 Hb_002250_140--Hb_007103_020 Hb_002335_010 Hb_002335_010 Hb_002250_140--Hb_002335_010 Hb_000574_230--Hb_007257_070 Hb_001269_240 Hb_001269_240 Hb_000574_230--Hb_001269_240 Hb_002725_080 Hb_002725_080 Hb_000574_230--Hb_002725_080 Hb_024650_010 Hb_024650_010 Hb_000574_230--Hb_024650_010 Hb_007221_040 Hb_007221_040 Hb_000574_230--Hb_007221_040 Hb_007257_070--Hb_001269_240 Hb_005074_010 Hb_005074_010 Hb_007257_070--Hb_005074_010 Hb_028928_020 Hb_028928_020 Hb_007257_070--Hb_028928_020 Hb_003071_050 Hb_003071_050 Hb_007257_070--Hb_003071_050 Hb_081864_010 Hb_081864_010 Hb_010174_200--Hb_081864_010 Hb_007441_360 Hb_007441_360 Hb_010174_200--Hb_007441_360 Hb_010174_200--Hb_173107_020 Hb_114733_010 Hb_114733_010 Hb_010174_200--Hb_114733_010 Hb_010174_200--Hb_009771_040 Hb_000258_230--Hb_007103_020 Hb_152277_010 Hb_152277_010 Hb_000258_230--Hb_152277_010 Hb_000201_010 Hb_000201_010 Hb_000258_230--Hb_000201_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.45681 0.712159 1.87858 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0170123 0 0.142081 1.15178

CAGE analysis