Hb_000365_280

Information

Type -
Description -
Location Contig365: 259550-260122
Sequence    

Annotation

kegg
ID rcu:RCOM_0126810
description calcium binding protein/cast, putative
nr
ID XP_002531819.1
description calcium binding protein/cast, putative [Ricinus communis]
swissprot
ID Q9SVG9
description Calcium-binding protein CML42 OS=Arabidopsis thaliana GN=CML42 PE=1 SV=1
trembl
ID B9T0Q0
description Calcium binding protein/cast, putative OS=Ricinus communis GN=RCOM_0126810 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein cml42-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37592: 259364-260424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_280 0.0 - - calcium binding protein/cast, putative [Ricinus communis]
2 Hb_000479_060 0.094774706 - - PREDICTED: UDP-glucose 6-dehydrogenase 1 [Vitis vinifera]
3 Hb_004007_070 0.1040006619 - - adenylsulfate kinase, putative [Ricinus communis]
4 Hb_002893_030 0.1160731132 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
5 Hb_005054_020 0.1328701823 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
6 Hb_000109_190 0.1330814317 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
7 Hb_002026_050 0.1362870781 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
8 Hb_001221_290 0.1392228186 - - hypothetical protein RCOM_1506010 [Ricinus communis]
9 Hb_188281_010 0.1426730819 - - carboxylic ester hydrolase, putative [Ricinus communis]
10 Hb_000424_030 0.1462354141 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003001_130 0.1465382502 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002173_030 0.1485490355 - - hypothetical protein JCGZ_12466 [Jatropha curcas]
13 Hb_012395_110 0.148823983 - - PREDICTED: peroxygenase [Jatropha curcas]
14 Hb_001999_200 0.1492740802 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
15 Hb_000086_090 0.1515983325 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
16 Hb_003929_230 0.1549569418 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
17 Hb_001472_140 0.1553826984 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
18 Hb_008406_030 0.1557137868 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
19 Hb_001951_190 0.1579917601 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
20 Hb_003849_190 0.1584319288 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_280 Hb_000365_280 Hb_000479_060 Hb_000479_060 Hb_000365_280--Hb_000479_060 Hb_004007_070 Hb_004007_070 Hb_000365_280--Hb_004007_070 Hb_002893_030 Hb_002893_030 Hb_000365_280--Hb_002893_030 Hb_005054_020 Hb_005054_020 Hb_000365_280--Hb_005054_020 Hb_000109_190 Hb_000109_190 Hb_000365_280--Hb_000109_190 Hb_002026_050 Hb_002026_050 Hb_000365_280--Hb_002026_050 Hb_000479_060--Hb_000109_190 Hb_001999_200 Hb_001999_200 Hb_000479_060--Hb_001999_200 Hb_005539_140 Hb_005539_140 Hb_000479_060--Hb_005539_140 Hb_002973_030 Hb_002973_030 Hb_000479_060--Hb_002973_030 Hb_081864_010 Hb_081864_010 Hb_000479_060--Hb_081864_010 Hb_012395_110 Hb_012395_110 Hb_004007_070--Hb_012395_110 Hb_000098_170 Hb_000098_170 Hb_004007_070--Hb_000098_170 Hb_000086_090 Hb_000086_090 Hb_004007_070--Hb_000086_090 Hb_000049_270 Hb_000049_270 Hb_004007_070--Hb_000049_270 Hb_004007_070--Hb_002893_030 Hb_188281_010 Hb_188281_010 Hb_002893_030--Hb_188281_010 Hb_103942_030 Hb_103942_030 Hb_002893_030--Hb_103942_030 Hb_002893_030--Hb_012395_110 Hb_002893_030--Hb_002026_050 Hb_000028_430 Hb_000028_430 Hb_005054_020--Hb_000028_430 Hb_000928_120 Hb_000928_120 Hb_005054_020--Hb_000928_120 Hb_002325_060 Hb_002325_060 Hb_005054_020--Hb_002325_060 Hb_003849_190 Hb_003849_190 Hb_005054_020--Hb_003849_190 Hb_000056_080 Hb_000056_080 Hb_005054_020--Hb_000056_080 Hb_005408_100 Hb_005408_100 Hb_000109_190--Hb_005408_100 Hb_003001_130 Hb_003001_130 Hb_000109_190--Hb_003001_130 Hb_020805_120 Hb_020805_120 Hb_000109_190--Hb_020805_120 Hb_003929_230 Hb_003929_230 Hb_000109_190--Hb_003929_230 Hb_004109_210 Hb_004109_210 Hb_002026_050--Hb_004109_210 Hb_001059_110 Hb_001059_110 Hb_002026_050--Hb_001059_110 Hb_005408_080 Hb_005408_080 Hb_002026_050--Hb_005408_080 Hb_007163_050 Hb_007163_050 Hb_002026_050--Hb_007163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.52806 114.391 85.3947 280.972 5.40828 8.94861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4973 14.5423 18.7562 19.1673 68.1029

CAGE analysis