Hb_004109_210

Information

Type -
Description -
Location Contig4109: 171613-173400
Sequence    

Annotation

kegg
ID rcu:RCOM_1716910
description 9-cis-epoxycarotenoid dioxygenase, putative (EC:1.14.99.36)
nr
ID XP_012084339.1
description PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9LRR7
description 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1
trembl
ID A0A067JY13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19722 PE=4 SV=1
Gene Ontology
ID GO:0003834
description 9-cis-epoxycarotenoid dioxygenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40652: 171359-172353 , PASA_asmbl_40653: 172558-173058
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_210 0.0 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
2 Hb_002026_050 0.1319879311 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
3 Hb_002893_030 0.1425064567 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
4 Hb_000164_010 0.1609295701 - - small heat-shock protein, putative [Ricinus communis]
5 Hb_005054_020 0.170315336 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
6 Hb_004116_070 0.1792396779 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
7 Hb_000020_100 0.1795904492 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
8 Hb_004007_070 0.1803942672 - - adenylsulfate kinase, putative [Ricinus communis]
9 Hb_000025_160 0.1845335151 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
10 Hb_000365_280 0.1853260772 - - calcium binding protein/cast, putative [Ricinus communis]
11 Hb_029977_020 0.1865204608 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
12 Hb_031022_020 0.1916812294 - - -
13 Hb_103942_030 0.1923381989 - - protein with unknown function [Ricinus communis]
14 Hb_002284_080 0.1950635718 - - protein with unknown function [Ricinus communis]
15 Hb_010883_180 0.1968180115 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
16 Hb_000086_090 0.1977719622 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
17 Hb_000740_150 0.1990642161 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
18 Hb_001059_110 0.1993261463 - - PREDICTED: uncharacterized protein LOC105649457 [Jatropha curcas]
19 Hb_014508_010 0.2018201244 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
20 Hb_001493_140 0.2019215222 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_004109_210 Hb_004109_210 Hb_002026_050 Hb_002026_050 Hb_004109_210--Hb_002026_050 Hb_002893_030 Hb_002893_030 Hb_004109_210--Hb_002893_030 Hb_000164_010 Hb_000164_010 Hb_004109_210--Hb_000164_010 Hb_005054_020 Hb_005054_020 Hb_004109_210--Hb_005054_020 Hb_004116_070 Hb_004116_070 Hb_004109_210--Hb_004116_070 Hb_000020_100 Hb_000020_100 Hb_004109_210--Hb_000020_100 Hb_000365_280 Hb_000365_280 Hb_002026_050--Hb_000365_280 Hb_002026_050--Hb_002893_030 Hb_001059_110 Hb_001059_110 Hb_002026_050--Hb_001059_110 Hb_005408_080 Hb_005408_080 Hb_002026_050--Hb_005408_080 Hb_007163_050 Hb_007163_050 Hb_002026_050--Hb_007163_050 Hb_004007_070 Hb_004007_070 Hb_002893_030--Hb_004007_070 Hb_002893_030--Hb_000365_280 Hb_188281_010 Hb_188281_010 Hb_002893_030--Hb_188281_010 Hb_103942_030 Hb_103942_030 Hb_002893_030--Hb_103942_030 Hb_012395_110 Hb_012395_110 Hb_002893_030--Hb_012395_110 Hb_003875_010 Hb_003875_010 Hb_000164_010--Hb_003875_010 Hb_104571_010 Hb_104571_010 Hb_000164_010--Hb_104571_010 Hb_000164_010--Hb_002026_050 Hb_000164_010--Hb_000020_100 Hb_122940_010 Hb_122940_010 Hb_000164_010--Hb_122940_010 Hb_000028_430 Hb_000028_430 Hb_005054_020--Hb_000028_430 Hb_000928_120 Hb_000928_120 Hb_005054_020--Hb_000928_120 Hb_002325_060 Hb_002325_060 Hb_005054_020--Hb_002325_060 Hb_003849_190 Hb_003849_190 Hb_005054_020--Hb_003849_190 Hb_005054_020--Hb_000365_280 Hb_000056_080 Hb_000056_080 Hb_005054_020--Hb_000056_080 Hb_002235_060 Hb_002235_060 Hb_004116_070--Hb_002235_060 Hb_004116_070--Hb_005054_020 Hb_004116_070--Hb_002325_060 Hb_002450_030 Hb_002450_030 Hb_004116_070--Hb_002450_030 Hb_004116_070--Hb_000928_120 Hb_000645_200 Hb_000645_200 Hb_004116_070--Hb_000645_200 Hb_031022_020 Hb_031022_020 Hb_000020_100--Hb_031022_020 Hb_000637_020 Hb_000637_020 Hb_000020_100--Hb_000637_020 Hb_084849_010 Hb_084849_010 Hb_000020_100--Hb_084849_010 Hb_000020_100--Hb_002026_050 Hb_002078_290 Hb_002078_290 Hb_000020_100--Hb_002078_290 Hb_118939_010 Hb_118939_010 Hb_000020_100--Hb_118939_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0418694 2.77808 4.41902 10.344 0.0323177 0.0548371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.306909 1.50921 1.67359 0.825537 1.6527

CAGE analysis