Hb_104571_010

Information

Type -
Description -
Location Contig104571: 13308-21053
Sequence    

Annotation

kegg
ID rcu:RCOM_0470840
description metal transporter, putative
nr
ID XP_012067502.1
description PREDICTED: metal transporter Nramp1 [Jatropha curcas]
swissprot
ID Q9SAH8
description Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=1 SV=1
trembl
ID A0A067L0L8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26995 PE=3 SV=1
Gene Ontology
ID GO:0016020
description metal transporter nramp6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01596: 13510-21026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_104571_010 0.0 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
2 Hb_003207_150 0.1471174511 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
3 Hb_000300_230 0.1582690233 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
4 Hb_000177_110 0.1610737848 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
5 Hb_003875_010 0.1759480903 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
6 Hb_002217_500 0.1794659868 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
7 Hb_000805_140 0.1798136211 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
8 Hb_131684_010 0.1798438869 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000455_070 0.1816307466 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
10 Hb_122636_010 0.1820854819 - - dienelactone hydrolase family protein [Populus trichocarpa]
11 Hb_000796_020 0.1837553621 - - ADP-ribosylation factor [Phaseolus vulgaris]
12 Hb_004453_070 0.18428694 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
13 Hb_000302_100 0.1845885954 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
14 Hb_006569_060 0.1864258659 - - plasma membrane intrinsic protein PIP2;3 [Hevea brasiliensis]
15 Hb_001999_100 0.1878321737 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
16 Hb_000797_060 0.1918118487 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_032143_020 0.1921347486 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
18 Hb_007483_060 0.1971612009 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
19 Hb_030992_010 0.19735174 - - acetylornithine aminotransferase, putative [Ricinus communis]
20 Hb_000164_010 0.1987044117 - - small heat-shock protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_104571_010 Hb_104571_010 Hb_003207_150 Hb_003207_150 Hb_104571_010--Hb_003207_150 Hb_000300_230 Hb_000300_230 Hb_104571_010--Hb_000300_230 Hb_000177_110 Hb_000177_110 Hb_104571_010--Hb_000177_110 Hb_003875_010 Hb_003875_010 Hb_104571_010--Hb_003875_010 Hb_002217_500 Hb_002217_500 Hb_104571_010--Hb_002217_500 Hb_000805_140 Hb_000805_140 Hb_104571_010--Hb_000805_140 Hb_003207_150--Hb_000177_110 Hb_053709_040 Hb_053709_040 Hb_003207_150--Hb_053709_040 Hb_034726_010 Hb_034726_010 Hb_003207_150--Hb_034726_010 Hb_001366_170 Hb_001366_170 Hb_003207_150--Hb_001366_170 Hb_000671_130 Hb_000671_130 Hb_003207_150--Hb_000671_130 Hb_122636_010 Hb_122636_010 Hb_003207_150--Hb_122636_010 Hb_000797_060 Hb_000797_060 Hb_000300_230--Hb_000797_060 Hb_002289_150 Hb_002289_150 Hb_000300_230--Hb_002289_150 Hb_001754_060 Hb_001754_060 Hb_000300_230--Hb_001754_060 Hb_004449_090 Hb_004449_090 Hb_000300_230--Hb_004449_090 Hb_000138_060 Hb_000138_060 Hb_000300_230--Hb_000138_060 Hb_005489_150 Hb_005489_150 Hb_000300_230--Hb_005489_150 Hb_000177_110--Hb_034726_010 Hb_000424_030 Hb_000424_030 Hb_000177_110--Hb_000424_030 Hb_007483_060 Hb_007483_060 Hb_000177_110--Hb_007483_060 Hb_000177_110--Hb_002217_500 Hb_000177_110--Hb_000671_130 Hb_001195_720 Hb_001195_720 Hb_003875_010--Hb_001195_720 Hb_000816_190 Hb_000816_190 Hb_003875_010--Hb_000816_190 Hb_003875_010--Hb_003207_150 Hb_014720_100 Hb_014720_100 Hb_003875_010--Hb_014720_100 Hb_003875_010--Hb_001366_170 Hb_001474_020 Hb_001474_020 Hb_002217_500--Hb_001474_020 Hb_003975_010 Hb_003975_010 Hb_002217_500--Hb_003975_010 Hb_002046_060 Hb_002046_060 Hb_002217_500--Hb_002046_060 Hb_001691_040 Hb_001691_040 Hb_002217_500--Hb_001691_040 Hb_002450_030 Hb_002450_030 Hb_002217_500--Hb_002450_030 Hb_023344_110 Hb_023344_110 Hb_002217_500--Hb_023344_110 Hb_005539_140 Hb_005539_140 Hb_000805_140--Hb_005539_140 Hb_000805_140--Hb_000300_230 Hb_030565_050 Hb_030565_050 Hb_000805_140--Hb_030565_050 Hb_000805_140--Hb_000797_060 Hb_000805_140--Hb_007483_060 Hb_000330_020 Hb_000330_020 Hb_000805_140--Hb_000330_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51065 5.0026 3.37594 26.6043 2.36859 0.531029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43537 3.95204 1.84908 2.32121 3.69985

CAGE analysis