Hb_001195_720

Information

Type -
Description -
Location Contig1195: 517375-517917
Sequence    

Annotation

kegg
ID tcc:TCM_033977
description Calmodulin-like 41, putative
nr
ID XP_012071769.1
description PREDICTED: probable calcium-binding protein CML41 [Jatropha curcas]
swissprot
ID Q8L3R2
description Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2
trembl
ID A0A067KQP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04382 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05874: 517661-517930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_720 0.0 - - PREDICTED: probable calcium-binding protein CML41 [Jatropha curcas]
2 Hb_003875_010 0.1662191213 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
3 Hb_000260_110 0.1866486962 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
4 Hb_001102_160 0.1938819045 - - PREDICTED: galacturonokinase [Jatropha curcas]
5 Hb_000054_010 0.1952529943 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
6 Hb_006157_010 0.2034155605 - - PREDICTED: endoglucanase 5 [Jatropha curcas]
7 Hb_061222_010 0.2037647071 - - hypothetical protein RCOM_0012650 [Ricinus communis]
8 Hb_010883_180 0.2058203348 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
9 Hb_000246_130 0.2106819809 - - tubulin alpha chain, putative [Ricinus communis]
10 Hb_000030_130 0.2108717999 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
11 Hb_188281_010 0.2116573335 - - carboxylic ester hydrolase, putative [Ricinus communis]
12 Hb_002272_200 0.2123991215 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
13 Hb_103942_030 0.212880584 - - protein with unknown function [Ricinus communis]
14 Hb_000069_560 0.2143040122 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
15 Hb_031089_020 0.217654853 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
16 Hb_003207_150 0.2202622 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
17 Hb_002498_030 0.2213441071 - - conserved hypothetical protein [Ricinus communis]
18 Hb_084147_010 0.2214038479 - - amino acid transporter, putative [Ricinus communis]
19 Hb_004007_070 0.2218091694 - - adenylsulfate kinase, putative [Ricinus communis]
20 Hb_002233_160 0.2221515814 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_720 Hb_001195_720 Hb_003875_010 Hb_003875_010 Hb_001195_720--Hb_003875_010 Hb_000260_110 Hb_000260_110 Hb_001195_720--Hb_000260_110 Hb_001102_160 Hb_001102_160 Hb_001195_720--Hb_001102_160 Hb_000054_010 Hb_000054_010 Hb_001195_720--Hb_000054_010 Hb_006157_010 Hb_006157_010 Hb_001195_720--Hb_006157_010 Hb_061222_010 Hb_061222_010 Hb_001195_720--Hb_061222_010 Hb_104571_010 Hb_104571_010 Hb_003875_010--Hb_104571_010 Hb_000816_190 Hb_000816_190 Hb_003875_010--Hb_000816_190 Hb_003207_150 Hb_003207_150 Hb_003875_010--Hb_003207_150 Hb_014720_100 Hb_014720_100 Hb_003875_010--Hb_014720_100 Hb_001366_170 Hb_001366_170 Hb_003875_010--Hb_001366_170 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000011_280 Hb_000011_280 Hb_000260_110--Hb_000011_280 Hb_010883_180 Hb_010883_180 Hb_000260_110--Hb_010883_180 Hb_002900_180 Hb_002900_180 Hb_000260_110--Hb_002900_180 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000462_070 Hb_000462_070 Hb_000260_110--Hb_000462_070 Hb_084147_010 Hb_084147_010 Hb_001102_160--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_001102_160--Hb_012395_110 Hb_004007_070 Hb_004007_070 Hb_001102_160--Hb_004007_070 Hb_019516_060 Hb_019516_060 Hb_001102_160--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_001102_160--Hb_000086_090 Hb_000246_130 Hb_000246_130 Hb_001102_160--Hb_000246_130 Hb_030565_100 Hb_030565_100 Hb_000054_010--Hb_030565_100 Hb_000054_010--Hb_010883_180 Hb_001186_110 Hb_001186_110 Hb_000054_010--Hb_001186_110 Hb_007311_050 Hb_007311_050 Hb_000054_010--Hb_007311_050 Hb_174541_030 Hb_174541_030 Hb_000054_010--Hb_174541_030 Hb_007574_040 Hb_007574_040 Hb_000054_010--Hb_007574_040 Hb_019516_070 Hb_019516_070 Hb_006157_010--Hb_019516_070 Hb_000922_400 Hb_000922_400 Hb_006157_010--Hb_000922_400 Hb_000820_110 Hb_000820_110 Hb_006157_010--Hb_000820_110 Hb_006002_050 Hb_006002_050 Hb_006157_010--Hb_006002_050 Hb_000907_160 Hb_000907_160 Hb_006157_010--Hb_000907_160 Hb_006157_010--Hb_019516_060 Hb_000003_110 Hb_000003_110 Hb_061222_010--Hb_000003_110 Hb_000025_160 Hb_000025_160 Hb_061222_010--Hb_000025_160 Hb_031089_020 Hb_031089_020 Hb_061222_010--Hb_031089_020 Hb_158092_040 Hb_158092_040 Hb_061222_010--Hb_158092_040 Hb_005784_060 Hb_005784_060 Hb_061222_010--Hb_005784_060 Hb_000997_240 Hb_000997_240 Hb_061222_010--Hb_000997_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.458548 1.12651 5.29774 0.494425 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470344 0.184786 0.159005 0.305154 1.05418

CAGE analysis