Hb_006157_010

Information

Type -
Description -
Location Contig6157: 10185-14120
Sequence    

Annotation

kegg
ID rcu:RCOM_0599690
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_012065824.1
description PREDICTED: endoglucanase 5 [Jatropha curcas]
swissprot
ID Q9M995
description Endoglucanase 5 OS=Arabidopsis thaliana GN=At1g48930 PE=2 SV=1
trembl
ID A0A067L4C6
description Endoglucanase OS=Jatropha curcas GN=JCGZ_24232 PE=3 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51214: 12741-13388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006157_010 0.0 - - PREDICTED: endoglucanase 5 [Jatropha curcas]
2 Hb_019516_070 0.1307113905 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
3 Hb_000922_400 0.1522313273 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
4 Hb_000820_110 0.1594599479 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
5 Hb_006002_050 0.1668021849 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
6 Hb_000907_160 0.1714818911 - - calcineurin-like phosphoesterase [Manihot esculenta]
7 Hb_019516_060 0.1740905592 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
8 Hb_002783_280 0.1753482935 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
9 Hb_002498_030 0.1766290663 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001673_090 0.1775947742 - - hypothetical protein POPTR_0006s21590g [Populus trichocarpa]
11 Hb_000297_140 0.179781392 - - hypothetical protein RCOM_0293450 [Ricinus communis]
12 Hb_007595_010 0.1803472343 - - Photosystem II reaction center protein K [Medicago truncatula]
13 Hb_003583_010 0.1816023341 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
14 Hb_000003_210 0.1816251728 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
15 Hb_000140_320 0.1818829922 - - delta-8 sphingolipid desaturase [Vernicia fordii]
16 Hb_012055_070 0.1841683476 - - calcium ion binding protein, putative [Ricinus communis]
17 Hb_000236_290 0.1865276191 - - organic anion transporter, putative [Ricinus communis]
18 Hb_013749_040 0.1865803129 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PXL1 [Jatropha curcas]
19 Hb_000856_400 0.1870725024 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
20 Hb_007625_010 0.1888176232 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_006157_010 Hb_006157_010 Hb_019516_070 Hb_019516_070 Hb_006157_010--Hb_019516_070 Hb_000922_400 Hb_000922_400 Hb_006157_010--Hb_000922_400 Hb_000820_110 Hb_000820_110 Hb_006157_010--Hb_000820_110 Hb_006002_050 Hb_006002_050 Hb_006157_010--Hb_006002_050 Hb_000907_160 Hb_000907_160 Hb_006157_010--Hb_000907_160 Hb_019516_060 Hb_019516_060 Hb_006157_010--Hb_019516_060 Hb_019516_070--Hb_000820_110 Hb_000236_290 Hb_000236_290 Hb_019516_070--Hb_000236_290 Hb_003177_040 Hb_003177_040 Hb_019516_070--Hb_003177_040 Hb_001159_230 Hb_001159_230 Hb_019516_070--Hb_001159_230 Hb_005730_060 Hb_005730_060 Hb_019516_070--Hb_005730_060 Hb_001699_080 Hb_001699_080 Hb_019516_070--Hb_001699_080 Hb_000922_400--Hb_006002_050 Hb_000345_550 Hb_000345_550 Hb_000922_400--Hb_000345_550 Hb_033720_030 Hb_033720_030 Hb_000922_400--Hb_033720_030 Hb_005784_010 Hb_005784_010 Hb_000922_400--Hb_005784_010 Hb_012055_070 Hb_012055_070 Hb_000922_400--Hb_012055_070 Hb_002783_280 Hb_002783_280 Hb_000922_400--Hb_002783_280 Hb_000297_140 Hb_000297_140 Hb_000820_110--Hb_000297_140 Hb_000193_210 Hb_000193_210 Hb_000820_110--Hb_000193_210 Hb_000820_110--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_000820_110--Hb_006750_010 Hb_000077_100 Hb_000077_100 Hb_000820_110--Hb_000077_100 Hb_000011_280 Hb_000011_280 Hb_006002_050--Hb_000011_280 Hb_000997_080 Hb_000997_080 Hb_006002_050--Hb_000997_080 Hb_006002_050--Hb_001159_230 Hb_000003_280 Hb_000003_280 Hb_006002_050--Hb_000003_280 Hb_006002_050--Hb_002783_280 Hb_006002_050--Hb_000297_140 Hb_003050_020 Hb_003050_020 Hb_000907_160--Hb_003050_020 Hb_000190_170 Hb_000190_170 Hb_000907_160--Hb_000190_170 Hb_000907_160--Hb_000003_280 Hb_003894_050 Hb_003894_050 Hb_000907_160--Hb_003894_050 Hb_000959_320 Hb_000959_320 Hb_000907_160--Hb_000959_320 Hb_053264_010 Hb_053264_010 Hb_000907_160--Hb_053264_010 Hb_000246_130 Hb_000246_130 Hb_019516_060--Hb_000246_130 Hb_000030_130 Hb_000030_130 Hb_019516_060--Hb_000030_130 Hb_003462_040 Hb_003462_040 Hb_019516_060--Hb_003462_040 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110 Hb_019516_060--Hb_006750_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.010957 0.0217576 0.309013 0.959295 0.0410342 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0498358 0.0196054 0.0370843 0.00780689 0.371873

CAGE analysis