Hb_000820_110

Information

Type -
Description -
Location Contig820: 110566-116041
Sequence    

Annotation

kegg
ID tcc:TCM_041878
description UDP-XYL synthase 5 isoform 5
nr
ID XP_007016477.1
description UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
swissprot
ID Q9SN95
description UDP-glucuronic acid decarboxylase 5 OS=Arabidopsis thaliana GN=UXS5 PE=2 SV=1
trembl
ID A0A061H036
description UDP-XYL synthase 6 isoform 1 OS=Theobroma cacao GN=TCM_041878 PE=4 SV=1
Gene Ontology
ID GO:0016829
description udp-xyl synthase 6 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59567: 110566-116077 , PASA_asmbl_59568: 110765-115988 , PASA_asmbl_59569: 110517-110751
cDNA
(Sanger)
(ID:Location)		 007_N12.ab1: 110765-114846 , 012_M10.ab1: 110765-114850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000820_110 0.0 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
2 Hb_000297_140 0.0848614059 - - hypothetical protein RCOM_0293450 [Ricinus communis]
3 Hb_000193_210 0.0929900205 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
4 Hb_019516_070 0.0955910803 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
5 Hb_019516_060 0.1040963776 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
6 Hb_006750_010 0.1160244329 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
7 Hb_000077_100 0.1197461654 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
8 Hb_003177_040 0.1205309859 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
9 Hb_006002_050 0.1235224424 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
10 Hb_001369_010 0.1281798852 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
11 Hb_030565_100 0.1301710324 - - serine hydroxymethyltransferase, putative [Ricinus communis]
12 Hb_000108_180 0.1301841589 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
13 Hb_000922_400 0.1307534471 - - PREDICTED: uncharacterized protein LOC105640363 [Jatropha curcas]
14 Hb_003097_160 0.1323249892 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
15 Hb_001159_230 0.1333535459 - - Kinesin heavy chain, putative [Ricinus communis]
16 Hb_064546_010 0.1338658895 - - PREDICTED: peroxidase 3 [Jatropha curcas]
17 Hb_000246_130 0.1350603437 - - tubulin alpha chain, putative [Ricinus communis]
18 Hb_084147_010 0.1366343288 - - amino acid transporter, putative [Ricinus communis]
19 Hb_006569_080 0.1385489196 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
20 Hb_003462_040 0.1385881554 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000820_110 Hb_000820_110 Hb_000297_140 Hb_000297_140 Hb_000820_110--Hb_000297_140 Hb_000193_210 Hb_000193_210 Hb_000820_110--Hb_000193_210 Hb_019516_070 Hb_019516_070 Hb_000820_110--Hb_019516_070 Hb_019516_060 Hb_019516_060 Hb_000820_110--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_000820_110--Hb_006750_010 Hb_000077_100 Hb_000077_100 Hb_000820_110--Hb_000077_100 Hb_006002_050 Hb_006002_050 Hb_000297_140--Hb_006002_050 Hb_030565_100 Hb_030565_100 Hb_000297_140--Hb_030565_100 Hb_000997_080 Hb_000997_080 Hb_000297_140--Hb_000997_080 Hb_000011_280 Hb_000011_280 Hb_000297_140--Hb_000011_280 Hb_007574_040 Hb_007574_040 Hb_000297_140--Hb_007574_040 Hb_000193_210--Hb_000077_100 Hb_003177_040 Hb_003177_040 Hb_000193_210--Hb_003177_040 Hb_001493_060 Hb_001493_060 Hb_000193_210--Hb_001493_060 Hb_000108_180 Hb_000108_180 Hb_000193_210--Hb_000108_180 Hb_003462_040 Hb_003462_040 Hb_000193_210--Hb_003462_040 Hb_000236_290 Hb_000236_290 Hb_019516_070--Hb_000236_290 Hb_019516_070--Hb_003177_040 Hb_001159_230 Hb_001159_230 Hb_019516_070--Hb_001159_230 Hb_005730_060 Hb_005730_060 Hb_019516_070--Hb_005730_060 Hb_001699_080 Hb_001699_080 Hb_019516_070--Hb_001699_080 Hb_000246_130 Hb_000246_130 Hb_019516_060--Hb_000246_130 Hb_000030_130 Hb_000030_130 Hb_019516_060--Hb_000030_130 Hb_019516_060--Hb_003462_040 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110 Hb_019516_060--Hb_006750_010 Hb_006750_010--Hb_003462_040 Hb_028396_020 Hb_028396_020 Hb_006750_010--Hb_028396_020 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_000077_100--Hb_030565_100 Hb_000236_180 Hb_000236_180 Hb_000077_100--Hb_000236_180 Hb_029223_040 Hb_029223_040 Hb_000077_100--Hb_029223_040 Hb_000580_110 Hb_000580_110 Hb_000077_100--Hb_000580_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.85156 21.1861 120.065 377.727 9.26672 9.3256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0547 11.3689 12.7113 29.1902 208.013

CAGE analysis