Hb_030565_100

Information

Type -
Description -
Location Contig30565: 94246-97177
Sequence    

Annotation

kegg
ID rcu:RCOM_0523510
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_002522806.1
description serine hydroxymethyltransferase, putative [Ricinus communis]
swissprot
ID O23254
description Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana GN=SHM4 PE=1 SV=1
trembl
ID B9S9Y7
description Serine hydroxymethyltransferase OS=Ricinus communis GN=RCOM_0523510 PE=3 SV=1
Gene Ontology
ID GO:0004372
description serine hydroxymethyltransferase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32278: 94238-97183 , PASA_asmbl_32279: 96181-96404
cDNA
(Sanger)
(ID:Location)		 029_F13.ab1: 96755-97183

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030565_100 0.0 - - serine hydroxymethyltransferase, putative [Ricinus communis]
2 Hb_000077_100 0.0843304208 - - PREDICTED: mannan endo-1,4-beta-mannosidase 2-like isoform X1 [Jatropha curcas]
3 Hb_029223_040 0.0918798772 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
4 Hb_000236_180 0.0988482273 - - serine hydroxymethyltransferase, putative [Ricinus communis]
5 Hb_174541_030 0.1052773782 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
6 Hb_003470_110 0.1170915905 - - unnamed protein product [Vitis vinifera]
7 Hb_000297_140 0.117211237 - - hypothetical protein RCOM_0293450 [Ricinus communis]
8 Hb_084147_010 0.1196056634 - - amino acid transporter, putative [Ricinus communis]
9 Hb_010883_180 0.119831 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
10 Hb_006615_230 0.1227880329 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
11 Hb_000030_130 0.1252133257 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
12 Hb_000054_010 0.1287942723 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
13 Hb_134014_010 0.1289034953 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
14 Hb_000246_130 0.129260051 - - tubulin alpha chain, putative [Ricinus communis]
15 Hb_000820_110 0.1301710324 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
16 Hb_001329_180 0.1317362362 - - S-adenosylmethionine synthetase 1 family protein [Populus trichocarpa]
17 Hb_000463_120 0.1322399517 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
18 Hb_031089_020 0.1323022526 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
19 Hb_002203_020 0.1329903434 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000580_110 0.1374312805 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_030565_100 Hb_030565_100 Hb_000077_100 Hb_000077_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_000236_180 Hb_000236_180 Hb_030565_100--Hb_000236_180 Hb_174541_030 Hb_174541_030 Hb_030565_100--Hb_174541_030 Hb_003470_110 Hb_003470_110 Hb_030565_100--Hb_003470_110 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_000077_100--Hb_000236_180 Hb_000077_100--Hb_029223_040 Hb_000820_110 Hb_000820_110 Hb_000077_100--Hb_000820_110 Hb_000193_210 Hb_000193_210 Hb_000077_100--Hb_000193_210 Hb_000580_110 Hb_000580_110 Hb_000077_100--Hb_000580_110 Hb_029223_040--Hb_000236_180 Hb_134014_010 Hb_134014_010 Hb_029223_040--Hb_134014_010 Hb_029223_040--Hb_003470_110 Hb_000806_130 Hb_000806_130 Hb_029223_040--Hb_000806_130 Hb_000236_180--Hb_000580_110 Hb_000236_180--Hb_003470_110 Hb_000417_380 Hb_000417_380 Hb_000236_180--Hb_000417_380 Hb_006615_230 Hb_006615_230 Hb_000236_180--Hb_006615_230 Hb_004117_020 Hb_004117_020 Hb_174541_030--Hb_004117_020 Hb_000457_120 Hb_000457_120 Hb_174541_030--Hb_000457_120 Hb_000030_130 Hb_000030_130 Hb_174541_030--Hb_000030_130 Hb_002203_020 Hb_002203_020 Hb_174541_030--Hb_002203_020 Hb_000392_540 Hb_000392_540 Hb_174541_030--Hb_000392_540 Hb_031089_020 Hb_031089_020 Hb_003470_110--Hb_031089_020 Hb_098795_030 Hb_098795_030 Hb_003470_110--Hb_098795_030 Hb_003470_110--Hb_006615_230 Hb_084147_010 Hb_084147_010 Hb_003470_110--Hb_084147_010 Hb_000297_140--Hb_000820_110 Hb_006002_050 Hb_006002_050 Hb_000297_140--Hb_006002_050 Hb_000997_080 Hb_000997_080 Hb_000297_140--Hb_000997_080 Hb_000011_280 Hb_000011_280 Hb_000297_140--Hb_000011_280 Hb_007574_040 Hb_007574_040 Hb_000297_140--Hb_007574_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4392 38.4441 82.6844 416.963 6.94971 6.93965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.48398 15.5906 15.3106 64.594 154.911

CAGE analysis