Hb_002203_020

Information

Type -
Description -
Location Contig2203: 12286-13041
Sequence    

Annotation

kegg
ID rcu:RCOM_1618470
description hypothetical protein
nr
ID XP_002511997.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9RE58
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1618470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22691: 12544-13025 , PASA_asmbl_22694: 13792-19058 , PASA_asmbl_22695: 13792-29751 , PASA_asmbl_22696: 13798-29751 , PASA_asmbl_22697: 13927-19066 , PASA_asmbl_22698: 13985-29731
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002203_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004117_020 0.0942876924 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005000_280 0.0984721574 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
4 Hb_002809_080 0.100189736 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000076_280 0.1126632813 - - PREDICTED: pectinesterase-like [Populus euphratica]
6 Hb_001769_070 0.113182974 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
7 Hb_027400_020 0.115746754 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
8 Hb_002518_020 0.1184190772 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
9 Hb_000329_010 0.1188008233 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
10 Hb_012395_050 0.1209519879 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
11 Hb_174541_030 0.1238530803 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
12 Hb_000028_550 0.1249582283 - - unknown [Medicago truncatula]
13 Hb_179960_010 0.129045124 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
14 Hb_155444_010 0.1294607266 - - -
15 Hb_000419_140 0.1308432859 - - Aquaporin PIP2.1, putative [Ricinus communis]
16 Hb_005784_060 0.1313255647 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
17 Hb_030565_100 0.1329903434 - - serine hydroxymethyltransferase, putative [Ricinus communis]
18 Hb_027405_010 0.1345354791 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
19 Hb_001404_070 0.1351161637 - - sucrose synthase 4 [Hevea brasiliensis]
20 Hb_154038_040 0.1358949958 - - nutrient reservoir, putative [Ricinus communis]

Gene co-expression network

sample Hb_002203_020 Hb_002203_020 Hb_004117_020 Hb_004117_020 Hb_002203_020--Hb_004117_020 Hb_005000_280 Hb_005000_280 Hb_002203_020--Hb_005000_280 Hb_002809_080 Hb_002809_080 Hb_002203_020--Hb_002809_080 Hb_000076_280 Hb_000076_280 Hb_002203_020--Hb_000076_280 Hb_001769_070 Hb_001769_070 Hb_002203_020--Hb_001769_070 Hb_027400_020 Hb_027400_020 Hb_002203_020--Hb_027400_020 Hb_174541_030 Hb_174541_030 Hb_004117_020--Hb_174541_030 Hb_002384_030 Hb_002384_030 Hb_004117_020--Hb_002384_030 Hb_001360_020 Hb_001360_020 Hb_004117_020--Hb_001360_020 Hb_000028_550 Hb_000028_550 Hb_004117_020--Hb_000028_550 Hb_155666_010 Hb_155666_010 Hb_004117_020--Hb_155666_010 Hb_002518_020 Hb_002518_020 Hb_005000_280--Hb_002518_020 Hb_005000_280--Hb_002809_080 Hb_005000_280--Hb_001769_070 Hb_005000_280--Hb_000076_280 Hb_000329_010 Hb_000329_010 Hb_005000_280--Hb_000329_010 Hb_005000_280--Hb_027400_020 Hb_002809_080--Hb_000329_010 Hb_002370_050 Hb_002370_050 Hb_002809_080--Hb_002370_050 Hb_002809_080--Hb_000076_280 Hb_149055_010 Hb_149055_010 Hb_002809_080--Hb_149055_010 Hb_031224_010 Hb_031224_010 Hb_002809_080--Hb_031224_010 Hb_000076_280--Hb_027400_020 Hb_000076_280--Hb_001769_070 Hb_000419_140 Hb_000419_140 Hb_000076_280--Hb_000419_140 Hb_000076_280--Hb_000329_010 Hb_002616_020 Hb_002616_020 Hb_000076_280--Hb_002616_020 Hb_001769_070--Hb_027400_020 Hb_001769_070--Hb_000329_010 Hb_001769_070--Hb_002518_020 Hb_001769_070--Hb_000419_140 Hb_027400_020--Hb_002616_020 Hb_027400_020--Hb_000419_140 Hb_002869_090 Hb_002869_090 Hb_027400_020--Hb_002869_090 Hb_027400_020--Hb_000329_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.182468 1.6532 2.30482 11.9606 0.0889247 0.174323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.145598 0.114474 0.102975 2.78581 3.08393

CAGE analysis