Hb_000011_280

Information

Type -
Description -
Location Contig11: 330059-334799
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07040g
description POPTRDRAFT_553829; pectinesterase family protein
nr
ID XP_002304257.2
description pectinesterase family protein [Populus trichocarpa]
swissprot
ID P83948
description Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1
trembl
ID B9GXZ8
description Pectinesterase OS=Populus trichocarpa GN=POPTR_0003s07040g PE=3 SV=2
Gene Ontology
ID GO:0005576
description pectin methylesterase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03000: 330078-333524 , PASA_asmbl_03001: 331562-331858 , PASA_asmbl_03002: 332225-332530
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_280 0.0 - - pectinesterase family protein [Populus trichocarpa]
2 Hb_006002_050 0.0866486882 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
3 Hb_000984_130 0.0960886116 - - tubulin [Ornithogalum longebracteatum]
4 Hb_001663_060 0.1036833291 - - ribonuclease t2, putative [Ricinus communis]
5 Hb_000395_310 0.1059518312 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_000997_080 0.1069460988 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
7 Hb_006788_110 0.1118657917 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
8 Hb_005648_020 0.1126970461 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
9 Hb_000260_110 0.1151924243 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
10 Hb_000003_280 0.1156925272 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004531_160 0.1157458398 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
12 Hb_006088_020 0.1181594566 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_003376_140 0.1184754144 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
14 Hb_000297_140 0.1198234234 - - hypothetical protein RCOM_0293450 [Ricinus communis]
15 Hb_003466_010 0.120326259 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
16 Hb_002388_070 0.1207718885 - - ring finger protein, putative [Ricinus communis]
17 Hb_005215_050 0.1228711903 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
18 Hb_003893_180 0.1228829958 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
19 Hb_002874_200 0.1233107746 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
20 Hb_000093_010 0.1253059173 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]

Gene co-expression network

sample Hb_000011_280 Hb_000011_280 Hb_006002_050 Hb_006002_050 Hb_000011_280--Hb_006002_050 Hb_000984_130 Hb_000984_130 Hb_000011_280--Hb_000984_130 Hb_001663_060 Hb_001663_060 Hb_000011_280--Hb_001663_060 Hb_000395_310 Hb_000395_310 Hb_000011_280--Hb_000395_310 Hb_000997_080 Hb_000997_080 Hb_000011_280--Hb_000997_080 Hb_006788_110 Hb_006788_110 Hb_000011_280--Hb_006788_110 Hb_006002_050--Hb_000997_080 Hb_001159_230 Hb_001159_230 Hb_006002_050--Hb_001159_230 Hb_000003_280 Hb_000003_280 Hb_006002_050--Hb_000003_280 Hb_002783_280 Hb_002783_280 Hb_006002_050--Hb_002783_280 Hb_000297_140 Hb_000297_140 Hb_006002_050--Hb_000297_140 Hb_000984_130--Hb_000997_080 Hb_064546_010 Hb_064546_010 Hb_000984_130--Hb_064546_010 Hb_000735_020 Hb_000735_020 Hb_000984_130--Hb_000735_020 Hb_000984_130--Hb_006788_110 Hb_002701_030 Hb_002701_030 Hb_000984_130--Hb_002701_030 Hb_000020_200 Hb_000020_200 Hb_001663_060--Hb_000020_200 Hb_001079_050 Hb_001079_050 Hb_001663_060--Hb_001079_050 Hb_003607_080 Hb_003607_080 Hb_001663_060--Hb_003607_080 Hb_003466_010 Hb_003466_010 Hb_001663_060--Hb_003466_010 Hb_005648_020 Hb_005648_020 Hb_001663_060--Hb_005648_020 Hb_002388_070 Hb_002388_070 Hb_000395_310--Hb_002388_070 Hb_002874_200 Hb_002874_200 Hb_000395_310--Hb_002874_200 Hb_004032_290 Hb_004032_290 Hb_000395_310--Hb_004032_290 Hb_000230_410 Hb_000230_410 Hb_000395_310--Hb_000230_410 Hb_000395_310--Hb_003466_010 Hb_010142_060 Hb_010142_060 Hb_000395_310--Hb_010142_060 Hb_000003_610 Hb_000003_610 Hb_000997_080--Hb_000003_610 Hb_000997_080--Hb_002701_030 Hb_000997_080--Hb_006788_110 Hb_033312_070 Hb_033312_070 Hb_006788_110--Hb_033312_070 Hb_003376_140 Hb_003376_140 Hb_006788_110--Hb_003376_140 Hb_006788_110--Hb_000735_020 Hb_004531_160 Hb_004531_160 Hb_006788_110--Hb_004531_160 Hb_011918_070 Hb_011918_070 Hb_006788_110--Hb_011918_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.588198 3.74135 11.7539 41.6095 0.114617 0.114498
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.539968 0.121395 0.577552 2.60475 12.813

CAGE analysis