Hb_001663_060

Information

Type -
Description -
Location Contig1663: 48361-52150
Sequence    

Annotation

kegg
ID rcu:RCOM_1212030
description ribonuclease t2, putative (EC:3.1.27.1)
nr
ID XP_002524581.1
description ribonuclease t2, putative [Ricinus communis]
swissprot
ID P42814
description Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1
trembl
ID B9SF12
description Ribonuclease t2, putative OS=Ricinus communis GN=RCOM_1212030 PE=3 SV=1
Gene Ontology
ID GO:0005773
description ribonuclease 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15358: 46389-60224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001663_060 0.0 - - ribonuclease t2, putative [Ricinus communis]
2 Hb_000020_200 0.0807387329 - - hypothetical protein EUGRSUZ_B00411 [Eucalyptus grandis]
3 Hb_001079_050 0.1036113735 - - Calmodulin, putative [Ricinus communis]
4 Hb_000011_280 0.1036833291 - - pectinesterase family protein [Populus trichocarpa]
5 Hb_003607_080 0.1082362719 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
6 Hb_003466_010 0.1087951901 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
7 Hb_005648_020 0.1098252858 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
8 Hb_000395_310 0.1121725686 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_000457_120 0.1121810781 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
10 Hb_004531_160 0.1130740794 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
11 Hb_000849_030 0.114518974 - - PREDICTED: fimbrin-2 [Jatropha curcas]
12 Hb_035995_010 0.1155647752 - - -
13 Hb_000093_010 0.11963788 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]
14 Hb_008021_050 0.1228812621 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002388_070 0.1251956118 - - ring finger protein, putative [Ricinus communis]
16 Hb_004558_060 0.1278378772 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
17 Hb_003376_140 0.1287480576 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
18 Hb_005215_050 0.1293854193 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
19 Hb_178049_010 0.1296036096 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
20 Hb_006154_010 0.1317007534 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001663_060 Hb_001663_060 Hb_000020_200 Hb_000020_200 Hb_001663_060--Hb_000020_200 Hb_001079_050 Hb_001079_050 Hb_001663_060--Hb_001079_050 Hb_000011_280 Hb_000011_280 Hb_001663_060--Hb_000011_280 Hb_003607_080 Hb_003607_080 Hb_001663_060--Hb_003607_080 Hb_003466_010 Hb_003466_010 Hb_001663_060--Hb_003466_010 Hb_005648_020 Hb_005648_020 Hb_001663_060--Hb_005648_020 Hb_000849_030 Hb_000849_030 Hb_000020_200--Hb_000849_030 Hb_000020_200--Hb_003466_010 Hb_008021_050 Hb_008021_050 Hb_000020_200--Hb_008021_050 Hb_036520_030 Hb_036520_030 Hb_000020_200--Hb_036520_030 Hb_000457_120 Hb_000457_120 Hb_000020_200--Hb_000457_120 Hb_006154_010 Hb_006154_010 Hb_001079_050--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_001079_050--Hb_169077_030 Hb_003376_140 Hb_003376_140 Hb_001079_050--Hb_003376_140 Hb_004531_160 Hb_004531_160 Hb_001079_050--Hb_004531_160 Hb_000103_300 Hb_000103_300 Hb_001079_050--Hb_000103_300 Hb_010142_060 Hb_010142_060 Hb_001079_050--Hb_010142_060 Hb_006002_050 Hb_006002_050 Hb_000011_280--Hb_006002_050 Hb_000984_130 Hb_000984_130 Hb_000011_280--Hb_000984_130 Hb_000395_310 Hb_000395_310 Hb_000011_280--Hb_000395_310 Hb_000997_080 Hb_000997_080 Hb_000011_280--Hb_000997_080 Hb_006788_110 Hb_006788_110 Hb_000011_280--Hb_006788_110 Hb_003607_080--Hb_008021_050 Hb_000093_010 Hb_000093_010 Hb_003607_080--Hb_000093_010 Hb_003607_080--Hb_005648_020 Hb_005215_050 Hb_005215_050 Hb_003607_080--Hb_005215_050 Hb_170077_020 Hb_170077_020 Hb_003607_080--Hb_170077_020 Hb_003607_080--Hb_003466_010 Hb_003466_010--Hb_005648_020 Hb_003466_010--Hb_000093_010 Hb_000866_130 Hb_000866_130 Hb_003466_010--Hb_000866_130 Hb_003466_010--Hb_036520_030 Hb_012132_050 Hb_012132_050 Hb_003466_010--Hb_012132_050 Hb_003466_010--Hb_008021_050 Hb_009736_020 Hb_009736_020 Hb_005648_020--Hb_009736_020 Hb_003849_170 Hb_003849_170 Hb_005648_020--Hb_003849_170 Hb_005648_020--Hb_000093_010 Hb_005648_020--Hb_170077_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.052181 1.63413 3.13248 12.578 0 0.0934331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.3654 0 0 0.989444 3.62383

CAGE analysis