Hb_000003_610

Information

Type -
Description -
Location Contig3: 445481-448014
Sequence    

Annotation

kegg
ID pop:POPTR_0011s04760g
description POPTRDRAFT_568253; hypothetical protein
nr
ID XP_012069092.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
swissprot
ID Q04644
description 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1
trembl
ID A0A067KXK2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24866 PE=4 SV=1
Gene Ontology
ID GO:0016491
description 1-aminocyclopropane-1-carboxylate oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31440: 446063-447078 , PASA_asmbl_31441: 447157-447740
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_610 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
2 Hb_000997_080 0.0985430962 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
3 Hb_006088_020 0.0995719713 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_002918_270 0.1196930975 - - PREDICTED: protein E6-like [Populus euphratica]
5 Hb_000984_130 0.1244268738 - - tubulin [Ornithogalum longebracteatum]
6 Hb_000261_070 0.1247099636 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
7 Hb_002902_060 0.1267719003 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
8 Hb_053264_010 0.1271054645 - - beta glucosidase [Hevea brasiliensis]
9 Hb_007904_280 0.1271208397 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
10 Hb_006788_110 0.128652444 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
11 Hb_058471_020 0.1292813277 - - PREDICTED: expansin-B3-like [Jatropha curcas]
12 Hb_003090_220 0.1297442826 - - PREDICTED: copper transporter 4 [Jatropha curcas]
13 Hb_010962_020 0.1308838955 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
14 Hb_033720_030 0.1324394028 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
15 Hb_150299_010 0.1327569751 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
16 Hb_006002_050 0.1332996876 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
17 Hb_025787_020 0.1336855358 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
18 Hb_001789_230 0.1343259478 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000964_040 0.1354253149 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER isoform X2 [Jatropha curcas]
20 Hb_002276_080 0.1357664798 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_610 Hb_000003_610 Hb_000997_080 Hb_000997_080 Hb_000003_610--Hb_000997_080 Hb_006088_020 Hb_006088_020 Hb_000003_610--Hb_006088_020 Hb_002918_270 Hb_002918_270 Hb_000003_610--Hb_002918_270 Hb_000984_130 Hb_000984_130 Hb_000003_610--Hb_000984_130 Hb_000261_070 Hb_000261_070 Hb_000003_610--Hb_000261_070 Hb_002902_060 Hb_002902_060 Hb_000003_610--Hb_002902_060 Hb_006002_050 Hb_006002_050 Hb_000997_080--Hb_006002_050 Hb_000997_080--Hb_000984_130 Hb_002701_030 Hb_002701_030 Hb_000997_080--Hb_002701_030 Hb_000011_280 Hb_000011_280 Hb_000997_080--Hb_000011_280 Hb_006788_110 Hb_006788_110 Hb_000997_080--Hb_006788_110 Hb_001369_190 Hb_001369_190 Hb_006088_020--Hb_001369_190 Hb_006088_020--Hb_002918_270 Hb_006088_020--Hb_000997_080 Hb_001789_230 Hb_001789_230 Hb_006088_020--Hb_001789_230 Hb_006088_020--Hb_000011_280 Hb_050898_030 Hb_050898_030 Hb_002918_270--Hb_050898_030 Hb_002918_270--Hb_001789_230 Hb_005648_020 Hb_005648_020 Hb_002918_270--Hb_005648_020 Hb_015292_020 Hb_015292_020 Hb_002918_270--Hb_015292_020 Hb_003466_010 Hb_003466_010 Hb_002918_270--Hb_003466_010 Hb_012132_050 Hb_012132_050 Hb_002918_270--Hb_012132_050 Hb_000984_130--Hb_000011_280 Hb_064546_010 Hb_064546_010 Hb_000984_130--Hb_064546_010 Hb_000735_020 Hb_000735_020 Hb_000984_130--Hb_000735_020 Hb_000984_130--Hb_006788_110 Hb_000984_130--Hb_002701_030 Hb_150299_010 Hb_150299_010 Hb_000261_070--Hb_150299_010 Hb_000003_370 Hb_000003_370 Hb_000261_070--Hb_000003_370 Hb_007904_280 Hb_007904_280 Hb_000261_070--Hb_007904_280 Hb_000964_040 Hb_000964_040 Hb_000261_070--Hb_000964_040 Hb_009785_030 Hb_009785_030 Hb_000261_070--Hb_009785_030 Hb_004223_060 Hb_004223_060 Hb_000261_070--Hb_004223_060 Hb_010962_020 Hb_010962_020 Hb_002902_060--Hb_010962_020 Hb_001047_090 Hb_001047_090 Hb_002902_060--Hb_001047_090 Hb_001709_120 Hb_001709_120 Hb_002902_060--Hb_001709_120 Hb_002902_060--Hb_015292_020 Hb_007122_020 Hb_007122_020 Hb_002902_060--Hb_007122_020 Hb_001975_110 Hb_001975_110 Hb_002902_060--Hb_001975_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0525536 0.117636 1.00959 2.62671 0.0772595 0.0376812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.159652 0.690492

CAGE analysis