Hb_006088_020

Information

Type -
Description -
Location Contig6088: 38677-42688
Sequence    

Annotation

kegg
ID rcu:RCOM_0096650
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002532709.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID O65440
description Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3
trembl
ID B9T390
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0096650 PE=4 SV=1
Gene Ontology
ID GO:0005622
description leucine-rich repeat receptor-like serine threonine-protein kinase bam3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50879: 41884-42751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006088_020 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_001369_190 0.0936483239 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
3 Hb_002918_270 0.0970733334 - - PREDICTED: protein E6-like [Populus euphratica]
4 Hb_000003_610 0.0995719713 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
5 Hb_000997_080 0.1122476723 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
6 Hb_001789_230 0.116020084 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000011_280 0.1181594566 - - pectinesterase family protein [Populus trichocarpa]
8 Hb_004558_060 0.1185822157 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
9 Hb_005648_020 0.1198965067 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
10 Hb_005215_050 0.1205263661 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
11 Hb_003607_080 0.1207875153 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
12 Hb_003175_120 0.1215718482 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
13 Hb_150299_010 0.1241140286 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Tarenaya hassleriana]
14 Hb_135757_030 0.1257897477 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
15 Hb_000984_130 0.1265782816 - - tubulin [Ornithogalum longebracteatum]
16 Hb_003090_220 0.1268580352 - - PREDICTED: copper transporter 4 [Jatropha curcas]
17 Hb_028514_010 0.1283917505 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
18 Hb_000395_310 0.1289829017 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_003893_180 0.1331167053 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
20 Hb_000093_010 0.1338169018 - - Ubiquinone biosynthesis protein coq-8, putative [Ricinus communis]

Gene co-expression network

sample Hb_006088_020 Hb_006088_020 Hb_001369_190 Hb_001369_190 Hb_006088_020--Hb_001369_190 Hb_002918_270 Hb_002918_270 Hb_006088_020--Hb_002918_270 Hb_000003_610 Hb_000003_610 Hb_006088_020--Hb_000003_610 Hb_000997_080 Hb_000997_080 Hb_006088_020--Hb_000997_080 Hb_001789_230 Hb_001789_230 Hb_006088_020--Hb_001789_230 Hb_000011_280 Hb_000011_280 Hb_006088_020--Hb_000011_280 Hb_004558_060 Hb_004558_060 Hb_001369_190--Hb_004558_060 Hb_001369_190--Hb_002918_270 Hb_003607_080 Hb_003607_080 Hb_001369_190--Hb_003607_080 Hb_005215_050 Hb_005215_050 Hb_001369_190--Hb_005215_050 Hb_000849_030 Hb_000849_030 Hb_001369_190--Hb_000849_030 Hb_050898_030 Hb_050898_030 Hb_002918_270--Hb_050898_030 Hb_002918_270--Hb_001789_230 Hb_005648_020 Hb_005648_020 Hb_002918_270--Hb_005648_020 Hb_015292_020 Hb_015292_020 Hb_002918_270--Hb_015292_020 Hb_003466_010 Hb_003466_010 Hb_002918_270--Hb_003466_010 Hb_012132_050 Hb_012132_050 Hb_002918_270--Hb_012132_050 Hb_000003_610--Hb_000997_080 Hb_000003_610--Hb_002918_270 Hb_000984_130 Hb_000984_130 Hb_000003_610--Hb_000984_130 Hb_000261_070 Hb_000261_070 Hb_000003_610--Hb_000261_070 Hb_002902_060 Hb_002902_060 Hb_000003_610--Hb_002902_060 Hb_006002_050 Hb_006002_050 Hb_000997_080--Hb_006002_050 Hb_000997_080--Hb_000984_130 Hb_002701_030 Hb_002701_030 Hb_000997_080--Hb_002701_030 Hb_000997_080--Hb_000011_280 Hb_006788_110 Hb_006788_110 Hb_000997_080--Hb_006788_110 Hb_003090_220 Hb_003090_220 Hb_001789_230--Hb_003090_220 Hb_002260_140 Hb_002260_140 Hb_001789_230--Hb_002260_140 Hb_000964_040 Hb_000964_040 Hb_001789_230--Hb_000964_040 Hb_001818_010 Hb_001818_010 Hb_001789_230--Hb_001818_010 Hb_001789_230--Hb_003466_010 Hb_000011_280--Hb_006002_050 Hb_000011_280--Hb_000984_130 Hb_001663_060 Hb_001663_060 Hb_000011_280--Hb_001663_060 Hb_000395_310 Hb_000395_310 Hb_000011_280--Hb_000395_310 Hb_000011_280--Hb_006788_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167736 0.649703 2.07919 7.53074 0.15082 0.108094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0277369 0 0.0208912 0.337549 1.46807

CAGE analysis