Hb_134014_010

Information

Type -
Description -
Location Contig134014: 617-1988
Sequence    

Annotation

kegg
ID tcc:TCM_022926
description ARM repeat superfamily protein, putative isoform 1
nr
ID XP_012074328.1
description PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KV24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08764 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09637: 12-424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134014_010 0.0 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
2 Hb_006615_230 0.0706301438 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
3 Hb_189003_070 0.100842363 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
4 Hb_000959_130 0.1061611484 - - organic anion transporter, putative [Ricinus communis]
5 Hb_012395_050 0.1126741904 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
6 Hb_029223_040 0.1234423437 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
7 Hb_158092_040 0.1244271633 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
8 Hb_001119_070 0.1246874094 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
9 Hb_006570_090 0.1252258439 - - tubulin beta chain, putative [Ricinus communis]
10 Hb_030565_100 0.1289034953 - - serine hydroxymethyltransferase, putative [Ricinus communis]
11 Hb_004522_030 0.131370716 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
12 Hb_003001_130 0.1327223026 - - conserved hypothetical protein [Ricinus communis]
13 Hb_098795_030 0.1336706659 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
14 Hb_007590_100 0.1350738575 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
15 Hb_000603_020 0.1356405057 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
16 Hb_002203_020 0.1369634197 - - conserved hypothetical protein [Ricinus communis]
17 Hb_155444_010 0.1379170601 - - -
18 Hb_002495_030 0.1411326443 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
19 Hb_000327_360 0.1420818944 - - unnamed protein product [Coffea canephora]
20 Hb_000236_180 0.1428073032 - - serine hydroxymethyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_134014_010 Hb_134014_010 Hb_006615_230 Hb_006615_230 Hb_134014_010--Hb_006615_230 Hb_189003_070 Hb_189003_070 Hb_134014_010--Hb_189003_070 Hb_000959_130 Hb_000959_130 Hb_134014_010--Hb_000959_130 Hb_012395_050 Hb_012395_050 Hb_134014_010--Hb_012395_050 Hb_029223_040 Hb_029223_040 Hb_134014_010--Hb_029223_040 Hb_158092_040 Hb_158092_040 Hb_134014_010--Hb_158092_040 Hb_006615_230--Hb_189003_070 Hb_098795_030 Hb_098795_030 Hb_006615_230--Hb_098795_030 Hb_001119_070 Hb_001119_070 Hb_006615_230--Hb_001119_070 Hb_006615_230--Hb_158092_040 Hb_002495_030 Hb_002495_030 Hb_006615_230--Hb_002495_030 Hb_006736_050 Hb_006736_050 Hb_189003_070--Hb_006736_050 Hb_036388_010 Hb_036388_010 Hb_189003_070--Hb_036388_010 Hb_000417_380 Hb_000417_380 Hb_189003_070--Hb_000417_380 Hb_189003_070--Hb_001119_070 Hb_001404_070 Hb_001404_070 Hb_000959_130--Hb_001404_070 Hb_000959_130--Hb_006615_230 Hb_000959_130--Hb_012395_050 Hb_000574_170 Hb_000574_170 Hb_000959_130--Hb_000574_170 Hb_000959_130--Hb_189003_070 Hb_155444_010 Hb_155444_010 Hb_012395_050--Hb_155444_010 Hb_179960_010 Hb_179960_010 Hb_012395_050--Hb_179960_010 Hb_029142_040 Hb_029142_040 Hb_012395_050--Hb_029142_040 Hb_000997_240 Hb_000997_240 Hb_012395_050--Hb_000997_240 Hb_030565_100 Hb_030565_100 Hb_029223_040--Hb_030565_100 Hb_000236_180 Hb_000236_180 Hb_029223_040--Hb_000236_180 Hb_000077_100 Hb_000077_100 Hb_029223_040--Hb_000077_100 Hb_003470_110 Hb_003470_110 Hb_029223_040--Hb_003470_110 Hb_000806_130 Hb_000806_130 Hb_029223_040--Hb_000806_130 Hb_080477_080 Hb_080477_080 Hb_158092_040--Hb_080477_080 Hb_158092_040--Hb_001119_070 Hb_005333_080 Hb_005333_080 Hb_158092_040--Hb_005333_080 Hb_004522_030 Hb_004522_030 Hb_158092_040--Hb_004522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.749883 4.74653 8.11928 23.7045 0.491533 1.05006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.133774 0.840757 1.2468 6.59587 9.82791

CAGE analysis