Hb_155444_010

Information

Type -
Description -
Location Contig155444: 177-1868
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13495: 179-1451 , PASA_asmbl_13496: 905-1018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155444_010 0.0 - - -
2 Hb_012395_050 0.079157535 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
3 Hb_029142_040 0.0820855653 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
4 Hb_002518_020 0.1108040229 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
5 Hb_000645_160 0.1127583054 - - protein translocase, putative [Ricinus communis]
6 Hb_002749_040 0.1144132685 - - Ribosomal protein L6 family protein [Theobroma cacao]
7 Hb_000997_240 0.115557772 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
8 Hb_005000_280 0.119647252 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
9 Hb_001138_070 0.1240140119 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
10 Hb_008021_040 0.1253154755 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
11 Hb_002999_080 0.1282758482 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
12 Hb_002203_020 0.1294607266 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001769_070 0.1305326272 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
14 Hb_139461_010 0.1305554525 desease resistance Gene Name: NB-ARC Cc-nbs-lrr resistance protein, putative [Theobroma cacao]
15 Hb_000679_250 0.1309703959 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
16 Hb_003606_050 0.135325717 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
17 Hb_002592_050 0.1356843608 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
18 Hb_134014_010 0.1379170601 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
19 Hb_030685_010 0.1380068588 - - -
20 Hb_003540_120 0.1381124837 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_155444_010 Hb_155444_010 Hb_012395_050 Hb_012395_050 Hb_155444_010--Hb_012395_050 Hb_029142_040 Hb_029142_040 Hb_155444_010--Hb_029142_040 Hb_002518_020 Hb_002518_020 Hb_155444_010--Hb_002518_020 Hb_000645_160 Hb_000645_160 Hb_155444_010--Hb_000645_160 Hb_002749_040 Hb_002749_040 Hb_155444_010--Hb_002749_040 Hb_000997_240 Hb_000997_240 Hb_155444_010--Hb_000997_240 Hb_179960_010 Hb_179960_010 Hb_012395_050--Hb_179960_010 Hb_134014_010 Hb_134014_010 Hb_012395_050--Hb_134014_010 Hb_012395_050--Hb_029142_040 Hb_012395_050--Hb_000997_240 Hb_000959_130 Hb_000959_130 Hb_012395_050--Hb_000959_130 Hb_008021_040 Hb_008021_040 Hb_029142_040--Hb_008021_040 Hb_001138_070 Hb_001138_070 Hb_029142_040--Hb_001138_070 Hb_029142_040--Hb_000645_160 Hb_029142_040--Hb_002518_020 Hb_005000_280 Hb_005000_280 Hb_002518_020--Hb_005000_280 Hb_001769_070 Hb_001769_070 Hb_002518_020--Hb_001769_070 Hb_004558_060 Hb_004558_060 Hb_002518_020--Hb_004558_060 Hb_000076_280 Hb_000076_280 Hb_002518_020--Hb_000076_280 Hb_002171_020 Hb_002171_020 Hb_002518_020--Hb_002171_020 Hb_000329_010 Hb_000329_010 Hb_002518_020--Hb_000329_010 Hb_000742_130 Hb_000742_130 Hb_000645_160--Hb_000742_130 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000645_160--Hb_000098_260 Hb_000645_160--Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_000645_160--Hb_149055_010 Hb_002749_040--Hb_012395_050 Hb_000032_430 Hb_000032_430 Hb_002749_040--Hb_000032_430 Hb_030685_010 Hb_030685_010 Hb_002749_040--Hb_030685_010 Hb_002272_200 Hb_002272_200 Hb_002749_040--Hb_002272_200 Hb_002749_040--Hb_002518_020 Hb_002999_080 Hb_002999_080 Hb_000997_240--Hb_002999_080 Hb_001348_010 Hb_001348_010 Hb_000997_240--Hb_001348_010 Hb_000997_240--Hb_005000_280 Hb_000997_240--Hb_029142_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.484131 6.26318 11.8808 29.7828 0.862796 0.698023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.17888 0.42182 0.248748 8.32304 6.19895

CAGE analysis