Hb_000997_240

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig997: 217892-219245
Sequence    

Annotation

kegg
ID rcu:RCOM_0909180
description Auxin-responsive protein IAA4, putative
nr
ID XP_002517024.1
description Auxin-responsive protein IAA4, putative [Ricinus communis]
swissprot
ID P32294
description Auxin-induced protein 22B OS=Vigna radiata var. radiata GN=AUX22B PE=2 SV=1
trembl
ID B9RTF5
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_0909180 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64878: 217912-219125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_240 0.0 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
2 Hb_002999_080 0.0915254538 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
3 Hb_001348_010 0.1107557783 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
4 Hb_005000_280 0.1145937013 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
5 Hb_029142_040 0.1149498695 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
6 Hb_155444_010 0.115557772 - - -
7 Hb_012395_050 0.1168467024 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
8 Hb_001138_070 0.1178894286 - - PREDICTED: D-3-phosphoglycerate dehydrogenase 1, chloroplastic-like [Jatropha curcas]
9 Hb_000645_160 0.1192520078 - - protein translocase, putative [Ricinus communis]
10 Hb_001597_030 0.119368518 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
11 Hb_001493_140 0.1220579648 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
12 Hb_005784_060 0.1252041126 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
13 Hb_003411_020 0.1283135501 - - alpha-glucosidase, putative [Ricinus communis]
14 Hb_000011_370 0.1297755834 - - PREDICTED: uncharacterized protein LOC105631333 [Jatropha curcas]
15 Hb_005333_080 0.134786042 - - conserved hypothetical protein [Ricinus communis]
16 Hb_189208_050 0.1363780287 - - PREDICTED: uncharacterized protein LOC105642694 isoform X2 [Jatropha curcas]
17 Hb_005357_120 0.1391730983 transcription factor TF Family: MYB-related -
18 Hb_002641_140 0.1392025665 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_002518_020 0.1396379864 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
20 Hb_001936_180 0.1414568896 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000997_240 Hb_000997_240 Hb_002999_080 Hb_002999_080 Hb_000997_240--Hb_002999_080 Hb_001348_010 Hb_001348_010 Hb_000997_240--Hb_001348_010 Hb_005000_280 Hb_005000_280 Hb_000997_240--Hb_005000_280 Hb_029142_040 Hb_029142_040 Hb_000997_240--Hb_029142_040 Hb_155444_010 Hb_155444_010 Hb_000997_240--Hb_155444_010 Hb_012395_050 Hb_012395_050 Hb_000997_240--Hb_012395_050 Hb_003411_020 Hb_003411_020 Hb_002999_080--Hb_003411_020 Hb_000866_320 Hb_000866_320 Hb_002999_080--Hb_000866_320 Hb_002999_080--Hb_155444_010 Hb_000645_160 Hb_000645_160 Hb_002999_080--Hb_000645_160 Hb_000563_630 Hb_000563_630 Hb_002999_080--Hb_000563_630 Hb_002292_080 Hb_002292_080 Hb_001348_010--Hb_002292_080 Hb_000310_110 Hb_000310_110 Hb_001348_010--Hb_000310_110 Hb_001348_010--Hb_012395_050 Hb_001138_070 Hb_001138_070 Hb_001348_010--Hb_001138_070 Hb_001085_190 Hb_001085_190 Hb_001348_010--Hb_001085_190 Hb_002518_020 Hb_002518_020 Hb_005000_280--Hb_002518_020 Hb_002809_080 Hb_002809_080 Hb_005000_280--Hb_002809_080 Hb_001769_070 Hb_001769_070 Hb_005000_280--Hb_001769_070 Hb_000076_280 Hb_000076_280 Hb_005000_280--Hb_000076_280 Hb_000329_010 Hb_000329_010 Hb_005000_280--Hb_000329_010 Hb_027400_020 Hb_027400_020 Hb_005000_280--Hb_027400_020 Hb_029142_040--Hb_155444_010 Hb_008021_040 Hb_008021_040 Hb_029142_040--Hb_008021_040 Hb_029142_040--Hb_001138_070 Hb_029142_040--Hb_000645_160 Hb_029142_040--Hb_002518_020 Hb_029142_040--Hb_012395_050 Hb_155444_010--Hb_012395_050 Hb_155444_010--Hb_002518_020 Hb_155444_010--Hb_000645_160 Hb_002749_040 Hb_002749_040 Hb_155444_010--Hb_002749_040 Hb_179960_010 Hb_179960_010 Hb_012395_050--Hb_179960_010 Hb_134014_010 Hb_134014_010 Hb_012395_050--Hb_134014_010 Hb_000959_130 Hb_000959_130 Hb_012395_050--Hb_000959_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.232884 5.48936 12.639 27.6956 0.0207642 0.0911097
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.710582 0.633418 0.481736 9.95166 6.04447

CAGE analysis