Hb_000563_630

Information

Type -
Description -
Location Contig563: 470181-470543
Sequence    

Annotation

kegg
ID rcu:RCOM_0681420
description hypothetical protein
nr
ID XP_012083955.1
description PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18888 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105643442

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48952: 470140-470814
cDNA
(Sanger)
(ID:Location)		 008_H07.ab1: 470140-470814 , 038_O13.ab1: 470140-470814 , 040_C01.ab1: 470142-470814 , 041_L13.ab1: 470145-470515

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_630 0.0 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
2 Hb_034507_090 0.0816823081 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
3 Hb_000210_160 0.088048554 - - PREDICTED: protein YLS9-like [Jatropha curcas]
4 Hb_000742_130 0.1079906456 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
5 Hb_006120_210 0.1096718491 - - gibberellin 20-oxidase, putative [Ricinus communis]
6 Hb_002888_100 0.112241836 - - PREDICTED: uncharacterized protein LOC103699074, partial [Phoenix dactylifera]
7 Hb_003849_200 0.112249994 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
8 Hb_001493_140 0.1151370704 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
9 Hb_001675_310 0.118719538 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
10 Hb_001562_030 0.1192054643 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
11 Hb_008725_020 0.1206856235 - - PREDICTED: cytidine deaminase 1 [Jatropha curcas]
12 Hb_000152_170 0.1210585129 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
13 Hb_001048_070 0.1219566493 transcription factor TF Family: HB hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
14 Hb_000098_260 0.124213582 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_000645_160 0.1253505122 - - protein translocase, putative [Ricinus communis]
16 Hb_003747_250 0.130200637 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
17 Hb_016564_060 0.1302908334 - - PREDICTED: uncharacterized protein LOC105628249 [Jatropha curcas]
18 Hb_002999_080 0.1315687406 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
19 Hb_004634_030 0.1331951676 - - conserved hypothetical protein [Ricinus communis]
20 Hb_012787_060 0.1353316043 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]

Gene co-expression network

sample Hb_000563_630 Hb_000563_630 Hb_034507_090 Hb_034507_090 Hb_000563_630--Hb_034507_090 Hb_000210_160 Hb_000210_160 Hb_000563_630--Hb_000210_160 Hb_000742_130 Hb_000742_130 Hb_000563_630--Hb_000742_130 Hb_006120_210 Hb_006120_210 Hb_000563_630--Hb_006120_210 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_003849_200 Hb_003849_200 Hb_000563_630--Hb_003849_200 Hb_001493_140 Hb_001493_140 Hb_034507_090--Hb_001493_140 Hb_034507_090--Hb_000742_130 Hb_016564_060 Hb_016564_060 Hb_034507_090--Hb_016564_060 Hb_034507_090--Hb_000210_160 Hb_000645_160 Hb_000645_160 Hb_034507_090--Hb_000645_160 Hb_001675_310 Hb_001675_310 Hb_000210_160--Hb_001675_310 Hb_000210_160--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_000210_160--Hb_003435_040 Hb_000152_170 Hb_000152_170 Hb_000210_160--Hb_000152_170 Hb_000742_130--Hb_000645_160 Hb_002518_220 Hb_002518_220 Hb_000742_130--Hb_002518_220 Hb_000098_260 Hb_000098_260 Hb_000742_130--Hb_000098_260 Hb_000742_130--Hb_006120_210 Hb_092975_010 Hb_092975_010 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_003747_250 Hb_003747_250 Hb_006120_210--Hb_003747_250 Hb_006120_210--Hb_002518_220 Hb_002639_050 Hb_002639_050 Hb_006120_210--Hb_002639_050 Hb_001054_040 Hb_001054_040 Hb_006120_210--Hb_001054_040 Hb_001562_030 Hb_001562_030 Hb_002888_100--Hb_001562_030 Hb_012787_060 Hb_012787_060 Hb_002888_100--Hb_012787_060 Hb_002888_100--Hb_000098_260 Hb_001048_070 Hb_001048_070 Hb_002888_100--Hb_001048_070 Hb_008725_020 Hb_008725_020 Hb_002888_100--Hb_008725_020 Hb_004634_030 Hb_004634_030 Hb_002888_100--Hb_004634_030 Hb_001013_080 Hb_001013_080 Hb_003849_200--Hb_001013_080 Hb_003849_200--Hb_001048_070 Hb_003849_200--Hb_008725_020 Hb_003849_200--Hb_003435_040 Hb_003849_200--Hb_004634_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94702 136.431 154.106 274.648 0.597461 1.90809
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66164 4.56283 3.53221 68.0204 58.6572

CAGE analysis