Hb_001493_140

Information

Type -
Description -
Location Contig1493: 98348-106681
Sequence    

Annotation

kegg
ID pvu:PHAVU_010G123100g
description hypothetical protein
nr
ID XP_007135363.1
description hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
swissprot
ID P83948
description Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1
trembl
ID K7KZN7
description Pectinesterase OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12445: 98350-101394 , PASA_asmbl_12446: 99829-100205 , PASA_asmbl_12447: 103555-106943
cDNA
(Sanger)
(ID:Location)		 010_M09.ab1: 98356-99068

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_140 0.0 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
2 Hb_034507_090 0.0906396657 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
3 Hb_000563_630 0.1151370704 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
4 Hb_000645_160 0.1180297945 - - protein translocase, putative [Ricinus communis]
5 Hb_000997_240 0.1220579648 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
6 Hb_000742_130 0.1227124914 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
7 Hb_002999_080 0.1320119529 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
8 Hb_001318_100 0.1345358786 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
9 Hb_004241_110 0.1356670618 - - Minor allergen Alt a, putative [Ricinus communis]
10 Hb_032920_030 0.1406407006 - - signal transducer, putative [Ricinus communis]
11 Hb_007479_080 0.1413164444 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
12 Hb_000025_160 0.14239377 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
13 Hb_001936_180 0.1452375809 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
14 Hb_003606_050 0.1463181979 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
15 Hb_155444_010 0.14666194 - - -
16 Hb_010672_050 0.1471919571 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
17 Hb_003411_020 0.1483156585 - - alpha-glucosidase, putative [Ricinus communis]
18 Hb_061222_010 0.1484357264 - - hypothetical protein RCOM_0012650 [Ricinus communis]
19 Hb_000098_260 0.1501841665 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
20 Hb_001085_190 0.1523853153 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001493_140 Hb_001493_140 Hb_034507_090 Hb_034507_090 Hb_001493_140--Hb_034507_090 Hb_000563_630 Hb_000563_630 Hb_001493_140--Hb_000563_630 Hb_000645_160 Hb_000645_160 Hb_001493_140--Hb_000645_160 Hb_000997_240 Hb_000997_240 Hb_001493_140--Hb_000997_240 Hb_000742_130 Hb_000742_130 Hb_001493_140--Hb_000742_130 Hb_002999_080 Hb_002999_080 Hb_001493_140--Hb_002999_080 Hb_034507_090--Hb_000563_630 Hb_034507_090--Hb_000742_130 Hb_016564_060 Hb_016564_060 Hb_034507_090--Hb_016564_060 Hb_000210_160 Hb_000210_160 Hb_034507_090--Hb_000210_160 Hb_034507_090--Hb_000645_160 Hb_000563_630--Hb_000210_160 Hb_000563_630--Hb_000742_130 Hb_006120_210 Hb_006120_210 Hb_000563_630--Hb_006120_210 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_003849_200 Hb_003849_200 Hb_000563_630--Hb_003849_200 Hb_000645_160--Hb_000742_130 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000645_160--Hb_000098_260 Hb_001138_070 Hb_001138_070 Hb_000645_160--Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_000645_160--Hb_149055_010 Hb_000997_240--Hb_002999_080 Hb_001348_010 Hb_001348_010 Hb_000997_240--Hb_001348_010 Hb_005000_280 Hb_005000_280 Hb_000997_240--Hb_005000_280 Hb_029142_040 Hb_029142_040 Hb_000997_240--Hb_029142_040 Hb_155444_010 Hb_155444_010 Hb_000997_240--Hb_155444_010 Hb_012395_050 Hb_012395_050 Hb_000997_240--Hb_012395_050 Hb_002518_220 Hb_002518_220 Hb_000742_130--Hb_002518_220 Hb_000742_130--Hb_000098_260 Hb_000742_130--Hb_006120_210 Hb_092975_010 Hb_092975_010 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_003411_020 Hb_003411_020 Hb_002999_080--Hb_003411_020 Hb_000866_320 Hb_000866_320 Hb_002999_080--Hb_000866_320 Hb_002999_080--Hb_155444_010 Hb_002999_080--Hb_000645_160 Hb_002999_080--Hb_000563_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.660154 31.8495 45.9013 94.9104 0.142096 0.372374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.23521 5.31326 3.14983 21.8652 29.1225

CAGE analysis