Hb_003177_040

Information

Type -
Description -
Location Contig3177: 45683-50183
Sequence    

Annotation

kegg
ID rcu:RCOM_1597400
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_002510516.1
description endo-1,4-beta-glucanase, putative [Ricinus communis]
swissprot
ID Q8LCP6
description Endoglucanase 10 OS=Arabidopsis thaliana GN=At1g75680 PE=2 SV=2
trembl
ID B9R873
description Endoglucanase OS=Ricinus communis GN=RCOM_1597400 PE=3 SV=1
Gene Ontology
ID GO:0008810
description glycosyl hydrolase family 9 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33465: 45816-50338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_040 0.0 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
2 Hb_000108_180 0.0766245568 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
3 Hb_001001_070 0.1100559792 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
4 Hb_000236_290 0.1122243008 - - organic anion transporter, putative [Ricinus communis]
5 Hb_008461_060 0.1137452336 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
6 Hb_001699_080 0.1158348336 - - unnamed protein product [Coffea canephora]
7 Hb_000251_120 0.1159009147 - - O-acetyltransferase, putative [Ricinus communis]
8 Hb_019516_070 0.1176298801 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
9 Hb_025645_020 0.1183661526 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
10 Hb_002894_080 0.1198147423 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000820_110 0.1205309859 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
12 Hb_001951_080 0.1271031977 - - O-acetyltransferase, putative [Ricinus communis]
13 Hb_000193_210 0.1292055705 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]
14 Hb_003097_160 0.1297215982 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
15 Hb_000813_070 0.1334702822 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001688_050 0.1347706208 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
17 Hb_000345_550 0.1351793169 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
18 Hb_003086_030 0.1357516925 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
19 Hb_005295_020 0.137718904 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
20 Hb_002081_020 0.1416085468 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003177_040 Hb_003177_040 Hb_000108_180 Hb_000108_180 Hb_003177_040--Hb_000108_180 Hb_001001_070 Hb_001001_070 Hb_003177_040--Hb_001001_070 Hb_000236_290 Hb_000236_290 Hb_003177_040--Hb_000236_290 Hb_008461_060 Hb_008461_060 Hb_003177_040--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_003177_040--Hb_001699_080 Hb_000251_120 Hb_000251_120 Hb_003177_040--Hb_000251_120 Hb_000108_180--Hb_000251_120 Hb_000108_180--Hb_001001_070 Hb_001541_060 Hb_001541_060 Hb_000108_180--Hb_001541_060 Hb_000176_080 Hb_000176_080 Hb_000108_180--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_000108_180--Hb_005183_130 Hb_001001_070--Hb_000251_120 Hb_001001_070--Hb_008461_060 Hb_002081_020 Hb_002081_020 Hb_001001_070--Hb_002081_020 Hb_002759_030 Hb_002759_030 Hb_001001_070--Hb_002759_030 Hb_019516_070 Hb_019516_070 Hb_000236_290--Hb_019516_070 Hb_000236_290--Hb_000108_180 Hb_000236_290--Hb_008461_060 Hb_005295_020 Hb_005295_020 Hb_000236_290--Hb_005295_020 Hb_000236_290--Hb_001699_080 Hb_002151_070 Hb_002151_070 Hb_008461_060--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_008461_060--Hb_001289_070 Hb_008461_060--Hb_002081_020 Hb_158092_050 Hb_158092_050 Hb_008461_060--Hb_158092_050 Hb_000813_070 Hb_000813_070 Hb_008461_060--Hb_000813_070 Hb_000103_130 Hb_000103_130 Hb_001699_080--Hb_000103_130 Hb_001512_130 Hb_001512_130 Hb_001699_080--Hb_001512_130 Hb_015807_130 Hb_015807_130 Hb_001699_080--Hb_015807_130 Hb_000270_380 Hb_000270_380 Hb_001699_080--Hb_000270_380 Hb_001699_080--Hb_002081_020 Hb_005656_120 Hb_005656_120 Hb_001699_080--Hb_005656_120 Hb_000392_540 Hb_000392_540 Hb_000251_120--Hb_000392_540 Hb_000251_120--Hb_008461_060 Hb_001195_380 Hb_001195_380 Hb_000251_120--Hb_001195_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52071 11.4908 39.0566 173.582 7.47841 4.64111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.984449 0.968272 2.699 6.52439 109.572

CAGE analysis