Hb_002081_020

Information

Type transcription factor
Description TF Family: LIM
Location Contig2081: 19921-21508
Sequence    

Annotation

kegg
ID rcu:RCOM_0834980
description Cysteine and glycine-rich protein, putative
nr
ID XP_002532425.1
description Cysteine and glycine-rich protein, putative [Ricinus communis]
swissprot
ID Q94JX5
description LIM domain-containing protein WLIM1 OS=Arabidopsis thaliana GN=WLIM1 PE=1 SV=1
trembl
ID B9T2F6
description Cysteine and glycine-rich protein, putative OS=Ricinus communis GN=RCOM_0834980 PE=4 SV=1
Gene Ontology
ID GO:0008270
description pollen-specific protein sf3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21544: 19938-30428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_020 0.0 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
2 Hb_015807_130 0.0868889669 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
3 Hb_008461_060 0.09179935 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
4 Hb_001699_080 0.0980434668 - - unnamed protein product [Coffea canephora]
5 Hb_001289_070 0.1105597879 - - PREDICTED: protein YLS9-like [Jatropha curcas]
6 Hb_001001_070 0.1133384674 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
7 Hb_001688_050 0.1165698957 - - PREDICTED: reticulon-like protein B9 [Jatropha curcas]
8 Hb_002151_070 0.1246113137 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
9 Hb_000103_130 0.1255763895 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
10 Hb_004650_110 0.1268266812 - - hypothetical protein POPTR_0002s08760g [Populus trichocarpa]
11 Hb_001514_050 0.127424575 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
12 Hb_001140_290 0.1327933283 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
13 Hb_000392_350 0.13338169 - - zinc finger protein, putative [Ricinus communis]
14 Hb_002759_030 0.1341661081 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
15 Hb_019516_070 0.1341903665 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
16 Hb_005000_150 0.1367592048 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000813_070 0.1377927982 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000173_240 0.1382684853 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001500_130 0.1385520837 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
20 Hb_000103_440 0.1389296964 - - hypothetical protein POPTR_0008s15900g [Populus trichocarpa]

Gene co-expression network

sample Hb_002081_020 Hb_002081_020 Hb_015807_130 Hb_015807_130 Hb_002081_020--Hb_015807_130 Hb_008461_060 Hb_008461_060 Hb_002081_020--Hb_008461_060 Hb_001699_080 Hb_001699_080 Hb_002081_020--Hb_001699_080 Hb_001289_070 Hb_001289_070 Hb_002081_020--Hb_001289_070 Hb_001001_070 Hb_001001_070 Hb_002081_020--Hb_001001_070 Hb_001688_050 Hb_001688_050 Hb_002081_020--Hb_001688_050 Hb_015807_130--Hb_001289_070 Hb_003152_020 Hb_003152_020 Hb_015807_130--Hb_003152_020 Hb_002151_070 Hb_002151_070 Hb_015807_130--Hb_002151_070 Hb_001140_290 Hb_001140_290 Hb_015807_130--Hb_001140_290 Hb_015807_130--Hb_001688_050 Hb_008461_060--Hb_002151_070 Hb_008461_060--Hb_001289_070 Hb_158092_050 Hb_158092_050 Hb_008461_060--Hb_158092_050 Hb_000813_070 Hb_000813_070 Hb_008461_060--Hb_000813_070 Hb_008461_060--Hb_001001_070 Hb_000103_130 Hb_000103_130 Hb_001699_080--Hb_000103_130 Hb_001512_130 Hb_001512_130 Hb_001699_080--Hb_001512_130 Hb_001699_080--Hb_015807_130 Hb_000270_380 Hb_000270_380 Hb_001699_080--Hb_000270_380 Hb_005656_120 Hb_005656_120 Hb_001699_080--Hb_005656_120 Hb_005711_030 Hb_005711_030 Hb_001289_070--Hb_005711_030 Hb_005000_150 Hb_005000_150 Hb_001289_070--Hb_005000_150 Hb_001289_070--Hb_003152_020 Hb_001289_070--Hb_000813_070 Hb_001289_070--Hb_002151_070 Hb_000251_120 Hb_000251_120 Hb_001001_070--Hb_000251_120 Hb_000108_180 Hb_000108_180 Hb_001001_070--Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_001001_070--Hb_003177_040 Hb_002759_030 Hb_002759_030 Hb_001001_070--Hb_002759_030 Hb_000103_440 Hb_000103_440 Hb_001688_050--Hb_000103_440 Hb_001688_050--Hb_001289_070 Hb_003058_240 Hb_003058_240 Hb_001688_050--Hb_003058_240 Hb_001688_050--Hb_000813_070 Hb_004650_110 Hb_004650_110 Hb_001688_050--Hb_004650_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.546023 7.07659 20.8807 93.0739 0.662701 0.430071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.64249 1.52178 0.98221 1.62384 78.009

CAGE analysis