Hb_000246_130

Information

Type -
Description -
Location Contig246: 213532-215825
Sequence    

Annotation

kegg
ID atr:s00033p00112490
description AMTR_s00033p00112490; hypothetical protein
nr
ID XP_002510010.1
description tubulin alpha chain, putative [Ricinus communis]
swissprot
ID P33629
description Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1
trembl
ID U5D1H7
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00033p00112490 PE=3 SV=1
Gene Ontology
ID GO:0005737
description alpha tubulin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25596: 213548-215939 , PASA_asmbl_25597: 213548-214917
cDNA
(Sanger)
(ID:Location)		 005_A21.ab1: 213549-214816 , 047_P22.ab1: 213548-214720

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000246_130 0.0 - - tubulin alpha chain, putative [Ricinus communis]
2 Hb_019516_060 0.0944647736 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
3 Hb_000030_130 0.1216422432 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
4 Hb_001102_160 0.1274140677 - - PREDICTED: galacturonokinase [Jatropha curcas]
5 Hb_030565_100 0.129260051 - - serine hydroxymethyltransferase, putative [Ricinus communis]
6 Hb_002316_080 0.1330201765 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
7 Hb_084147_010 0.1334882449 - - amino acid transporter, putative [Ricinus communis]
8 Hb_000820_110 0.1350603437 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
9 Hb_000684_220 0.1412589206 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_000236_180 0.1424715773 - - serine hydroxymethyltransferase, putative [Ricinus communis]
11 Hb_003207_150 0.1426651929 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
12 Hb_000808_150 0.1439279687 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
13 Hb_003462_040 0.1453920943 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_010883_180 0.1469942447 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
15 Hb_003462_080 0.1470201988 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
16 Hb_026527_010 0.1477307767 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
17 Hb_002596_080 0.1500418164 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g04160 [Jatropha curcas]
18 Hb_034726_010 0.1507212603 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_001369_010 0.1527915863 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
20 Hb_000193_210 0.1527994249 - - PREDICTED: LOW QUALITY PROTEIN: galactoside 2-alpha-L-fucosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_000246_130 Hb_000246_130 Hb_019516_060 Hb_019516_060 Hb_000246_130--Hb_019516_060 Hb_000030_130 Hb_000030_130 Hb_000246_130--Hb_000030_130 Hb_001102_160 Hb_001102_160 Hb_000246_130--Hb_001102_160 Hb_030565_100 Hb_030565_100 Hb_000246_130--Hb_030565_100 Hb_002316_080 Hb_002316_080 Hb_000246_130--Hb_002316_080 Hb_084147_010 Hb_084147_010 Hb_000246_130--Hb_084147_010 Hb_019516_060--Hb_000030_130 Hb_000820_110 Hb_000820_110 Hb_019516_060--Hb_000820_110 Hb_003462_040 Hb_003462_040 Hb_019516_060--Hb_003462_040 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110 Hb_006750_010 Hb_006750_010 Hb_019516_060--Hb_006750_010 Hb_174541_030 Hb_174541_030 Hb_000030_130--Hb_174541_030 Hb_003086_030 Hb_003086_030 Hb_000030_130--Hb_003086_030 Hb_000928_200 Hb_000928_200 Hb_000030_130--Hb_000928_200 Hb_000030_130--Hb_030565_100 Hb_001102_160--Hb_084147_010 Hb_001102_160--Hb_012395_110 Hb_004007_070 Hb_004007_070 Hb_001102_160--Hb_004007_070 Hb_001102_160--Hb_019516_060 Hb_000086_090 Hb_000086_090 Hb_001102_160--Hb_000086_090 Hb_000077_100 Hb_000077_100 Hb_030565_100--Hb_000077_100 Hb_029223_040 Hb_029223_040 Hb_030565_100--Hb_029223_040 Hb_000236_180 Hb_000236_180 Hb_030565_100--Hb_000236_180 Hb_030565_100--Hb_174541_030 Hb_003470_110 Hb_003470_110 Hb_030565_100--Hb_003470_110 Hb_000297_140 Hb_000297_140 Hb_030565_100--Hb_000297_140 Hb_010883_180 Hb_010883_180 Hb_002316_080--Hb_010883_180 Hb_000098_170 Hb_000098_170 Hb_002316_080--Hb_000098_170 Hb_007483_060 Hb_007483_060 Hb_002316_080--Hb_007483_060 Hb_002316_080--Hb_019516_060 Hb_002316_080--Hb_000086_090 Hb_004241_110 Hb_004241_110 Hb_084147_010--Hb_004241_110 Hb_031089_020 Hb_031089_020 Hb_084147_010--Hb_031089_020 Hb_084147_010--Hb_012395_110 Hb_084147_010--Hb_003470_110 Hb_084147_010--Hb_030565_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.6463 44.1626 103.231 470.667 16.9537 12.1039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.8972 37.7059 22.3537 31.7459 198.195

CAGE analysis