Hb_000098_170

Information

Type -
Description -
Location Contig98: 177769-179028
Sequence    

Annotation

kegg
ID rcu:RCOM_1590900
description hypothetical protein
nr
ID KDP46703.1
description hypothetical protein JCGZ_06491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06491 PE=4 SV=1
Gene Ontology
ID GO:0047134
description hypothetical protein JCGZ_06491

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64358: 175398-176836 , PASA_asmbl_64359: 175735-176779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_170 0.0 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
2 Hb_004007_070 0.0894720284 - - adenylsulfate kinase, putative [Ricinus communis]
3 Hb_000086_090 0.0897786284 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
4 Hb_000049_270 0.1060672964 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
5 Hb_006570_090 0.1289820786 - - tubulin beta chain, putative [Ricinus communis]
6 Hb_006889_030 0.1309218527 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
7 Hb_012395_110 0.1316513913 - - PREDICTED: peroxygenase [Jatropha curcas]
8 Hb_003680_030 0.1325795505 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
9 Hb_002316_080 0.1347609808 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
10 Hb_010883_180 0.1361971142 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
11 Hb_012807_150 0.1414329012 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
12 Hb_000023_110 0.1430692445 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
13 Hb_007483_060 0.1442479576 desease resistance Gene Name: ABC_membrane multidrug resistance protein 1, 2, putative [Ricinus communis]
14 Hb_028639_030 0.1465712683 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
15 Hb_000603_020 0.1486378241 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
16 Hb_003207_150 0.1501176028 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
17 Hb_002893_030 0.1530917794 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Populus euphratica]
18 Hb_103942_030 0.1537289006 - - protein with unknown function [Ricinus communis]
19 Hb_000349_200 0.156586657 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
20 Hb_001847_050 0.1571937849 - - hypothetical protein CISIN_1g019843mg [Citrus sinensis]

Gene co-expression network

sample Hb_000098_170 Hb_000098_170 Hb_004007_070 Hb_004007_070 Hb_000098_170--Hb_004007_070 Hb_000086_090 Hb_000086_090 Hb_000098_170--Hb_000086_090 Hb_000049_270 Hb_000049_270 Hb_000098_170--Hb_000049_270 Hb_006570_090 Hb_006570_090 Hb_000098_170--Hb_006570_090 Hb_006889_030 Hb_006889_030 Hb_000098_170--Hb_006889_030 Hb_012395_110 Hb_012395_110 Hb_000098_170--Hb_012395_110 Hb_004007_070--Hb_012395_110 Hb_004007_070--Hb_000086_090 Hb_004007_070--Hb_000049_270 Hb_000365_280 Hb_000365_280 Hb_004007_070--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_004007_070--Hb_002893_030 Hb_000086_090--Hb_012395_110 Hb_001102_160 Hb_001102_160 Hb_000086_090--Hb_001102_160 Hb_010883_180 Hb_010883_180 Hb_000086_090--Hb_010883_180 Hb_000349_200 Hb_000349_200 Hb_000086_090--Hb_000349_200 Hb_000049_270--Hb_006570_090 Hb_000023_110 Hb_000023_110 Hb_000049_270--Hb_000023_110 Hb_012807_150 Hb_012807_150 Hb_000049_270--Hb_012807_150 Hb_000049_270--Hb_006889_030 Hb_006570_090--Hb_012807_150 Hb_006570_090--Hb_004007_070 Hb_134014_010 Hb_134014_010 Hb_006570_090--Hb_134014_010 Hb_000603_020 Hb_000603_020 Hb_006570_090--Hb_000603_020 Hb_006570_090--Hb_000023_110 Hb_001119_070 Hb_001119_070 Hb_006889_030--Hb_001119_070 Hb_001459_090 Hb_001459_090 Hb_006889_030--Hb_001459_090 Hb_000236_180 Hb_000236_180 Hb_006889_030--Hb_000236_180 Hb_031284_030 Hb_031284_030 Hb_006889_030--Hb_031284_030 Hb_004241_110 Hb_004241_110 Hb_012395_110--Hb_004241_110 Hb_012395_110--Hb_001102_160 Hb_084147_010 Hb_084147_010 Hb_012395_110--Hb_084147_010 Hb_019516_060 Hb_019516_060 Hb_012395_110--Hb_019516_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.133889 0.479438 0.932057 2.62723 0.1425 0.121751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0765606 0.120452 0.393078 0.20489 0.874791

CAGE analysis