Hb_000603_020

Information

Type -
Description -
Location Contig603: 13485-18489
Sequence    

Annotation

kegg
ID rcu:RCOM_0707860
description topbp1, putative
nr
ID XP_012077171.1
description PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
swissprot
ID Q6ZQF0
description DNA topoisomerase 2-binding protein 1 OS=Mus musculus GN=Topbp1 PE=2 SV=2
trembl
ID A0A067KQA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50629: 14739-18330 , PASA_asmbl_50630: 14739-15172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000603_020 0.0 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
2 Hb_000271_220 0.0650155655 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
3 Hb_003001_130 0.0803444083 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012807_150 0.0904816424 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
5 Hb_000283_140 0.104443955 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
6 Hb_000320_350 0.1099572835 - - hypothetical protein RCOM_0904330 [Ricinus communis]
7 Hb_000424_030 0.1119195257 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003006_090 0.1193779228 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
9 Hb_000349_200 0.1203601267 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
10 Hb_011828_010 0.1237122449 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
11 Hb_000928_120 0.1248755225 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
12 Hb_084147_010 0.1258417519 - - amino acid transporter, putative [Ricinus communis]
13 Hb_006570_090 0.128573754 - - tubulin beta chain, putative [Ricinus communis]
14 Hb_028639_030 0.1296385933 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
15 Hb_000011_070 0.131031168 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
16 Hb_003929_230 0.131692806 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
17 Hb_189003_070 0.1317222753 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
18 Hb_000327_360 0.1342084087 - - unnamed protein product [Coffea canephora]
19 Hb_134014_010 0.1356405057 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
20 Hb_004007_070 0.1382900379 - - adenylsulfate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000603_020 Hb_000603_020 Hb_000271_220 Hb_000271_220 Hb_000603_020--Hb_000271_220 Hb_003001_130 Hb_003001_130 Hb_000603_020--Hb_003001_130 Hb_012807_150 Hb_012807_150 Hb_000603_020--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000603_020--Hb_000283_140 Hb_000320_350 Hb_000320_350 Hb_000603_020--Hb_000320_350 Hb_000424_030 Hb_000424_030 Hb_000603_020--Hb_000424_030 Hb_000271_220--Hb_012807_150 Hb_000271_220--Hb_000283_140 Hb_000349_200 Hb_000349_200 Hb_000271_220--Hb_000349_200 Hb_003006_090 Hb_003006_090 Hb_000271_220--Hb_003006_090 Hb_000271_220--Hb_003001_130 Hb_000928_120 Hb_000928_120 Hb_003001_130--Hb_000928_120 Hb_003001_130--Hb_000283_140 Hb_004241_110 Hb_004241_110 Hb_003001_130--Hb_004241_110 Hb_000227_280 Hb_000227_280 Hb_003001_130--Hb_000227_280 Hb_012807_150--Hb_000283_140 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_000327_360 Hb_000327_360 Hb_012807_150--Hb_000327_360 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000283_140--Hb_000928_120 Hb_004449_250 Hb_004449_250 Hb_000320_350--Hb_004449_250 Hb_011360_110 Hb_011360_110 Hb_000320_350--Hb_011360_110 Hb_000320_350--Hb_003001_130 Hb_028639_030 Hb_028639_030 Hb_000320_350--Hb_028639_030 Hb_000320_350--Hb_000928_120 Hb_006829_070 Hb_006829_070 Hb_000424_030--Hb_006829_070 Hb_000424_030--Hb_000271_220 Hb_002217_320 Hb_002217_320 Hb_000424_030--Hb_002217_320 Hb_000622_330 Hb_000622_330 Hb_000424_030--Hb_000622_330 Hb_006925_050 Hb_006925_050 Hb_000424_030--Hb_006925_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.14564 5.02076 6.40692 17.9191 0.631358 1.92286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.852526 1.00626 0.852497 2.85273 8.97062

CAGE analysis