Hb_003875_010

Information

Type -
Description -
Location Contig3875: 2-727
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14490g
description hypothetical protein
nr
ID XP_006386563.1
description hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GLF2
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0002s14490g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable plastidic glucose transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38879: 53-20776 , PASA_asmbl_38880: 53-20776 , PASA_asmbl_38881: 53-20954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003875_010 0.0 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
2 Hb_001195_720 0.1662191213 - - PREDICTED: probable calcium-binding protein CML41 [Jatropha curcas]
3 Hb_104571_010 0.1759480903 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
4 Hb_000816_190 0.1853542903 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003207_150 0.1860757526 - - PREDICTED: SPX domain-containing membrane protein At4g22990-like [Jatropha curcas]
6 Hb_014720_100 0.1883680015 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
7 Hb_001366_170 0.1938896066 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
8 Hb_002498_030 0.1949050975 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000164_010 0.1970360021 - - small heat-shock protein, putative [Ricinus communis]
10 Hb_053709_040 0.2004012897 - - putative actin-97 protein [Linum usitatissimum]
11 Hb_002490_030 0.2006769372 - - conserved hypothetical protein [Ricinus communis]
12 Hb_017439_010 0.2014480764 - - putative actin-97 protein [Linum usitatissimum]
13 Hb_001597_050 0.2030108224 - - -
14 Hb_007163_050 0.2055606708 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
15 Hb_000177_110 0.2085454348 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
16 Hb_001102_160 0.2101784849 - - PREDICTED: galacturonokinase [Jatropha curcas]
17 Hb_003813_010 0.2110103465 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 1-like [Jatropha curcas]
18 Hb_000260_110 0.2124609625 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
19 Hb_002316_080 0.2129189748 - - PREDICTED: RING-H2 finger protein ATL46-like [Populus euphratica]
20 Hb_000413_080 0.2139959088 - - -

Gene co-expression network

sample Hb_003875_010 Hb_003875_010 Hb_001195_720 Hb_001195_720 Hb_003875_010--Hb_001195_720 Hb_104571_010 Hb_104571_010 Hb_003875_010--Hb_104571_010 Hb_000816_190 Hb_000816_190 Hb_003875_010--Hb_000816_190 Hb_003207_150 Hb_003207_150 Hb_003875_010--Hb_003207_150 Hb_014720_100 Hb_014720_100 Hb_003875_010--Hb_014720_100 Hb_001366_170 Hb_001366_170 Hb_003875_010--Hb_001366_170 Hb_000260_110 Hb_000260_110 Hb_001195_720--Hb_000260_110 Hb_001102_160 Hb_001102_160 Hb_001195_720--Hb_001102_160 Hb_000054_010 Hb_000054_010 Hb_001195_720--Hb_000054_010 Hb_006157_010 Hb_006157_010 Hb_001195_720--Hb_006157_010 Hb_061222_010 Hb_061222_010 Hb_001195_720--Hb_061222_010 Hb_104571_010--Hb_003207_150 Hb_000300_230 Hb_000300_230 Hb_104571_010--Hb_000300_230 Hb_000177_110 Hb_000177_110 Hb_104571_010--Hb_000177_110 Hb_002217_500 Hb_002217_500 Hb_104571_010--Hb_002217_500 Hb_000805_140 Hb_000805_140 Hb_104571_010--Hb_000805_140 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_000816_190--Hb_001366_170 Hb_011918_010 Hb_011918_010 Hb_000816_190--Hb_011918_010 Hb_003207_150--Hb_000177_110 Hb_053709_040 Hb_053709_040 Hb_003207_150--Hb_053709_040 Hb_034726_010 Hb_034726_010 Hb_003207_150--Hb_034726_010 Hb_003207_150--Hb_001366_170 Hb_000671_130 Hb_000671_130 Hb_003207_150--Hb_000671_130 Hb_122636_010 Hb_122636_010 Hb_003207_150--Hb_122636_010 Hb_178968_040 Hb_178968_040 Hb_014720_100--Hb_178968_040 Hb_017002_010 Hb_017002_010 Hb_014720_100--Hb_017002_010 Hb_008695_220 Hb_008695_220 Hb_014720_100--Hb_008695_220 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_002686_260 Hb_002686_260 Hb_014720_100--Hb_002686_260 Hb_001366_170--Hb_053709_040 Hb_001902_200 Hb_001902_200 Hb_001366_170--Hb_001902_200 Hb_001366_170--Hb_002490_030 Hb_006351_020 Hb_006351_020 Hb_001366_170--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001366_170--Hb_004032_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.46877 13.0975 43.7479 150.947 9.75832 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.7701 17.1597 5.39496 7.70453 16.0666

CAGE analysis