Hb_002686_260

Information

Type transcription factor
Description TF Family: NAC
Location Contig2686: 176338-178543
Sequence    

Annotation

kegg
ID rcu:RCOM_1122330
description NAC domain-containing protein 21/22, putative
nr
ID XP_002525465.1
description NAC domain-containing protein 21/22, putative [Ricinus communis]
swissprot
ID Q9FLJ2
description NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1
trembl
ID B9SHJ6
description NAC domain-containing protein 21/22, putative OS=Ricinus communis GN=RCOM_1122330 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28037: 176230-178105
cDNA
(Sanger)
(ID:Location)		 030_I07.ab1: 176990-178105

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_260 0.0 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
2 Hb_005332_040 0.1622963379 - - hypothetical protein RCOM_0530890 [Ricinus communis]
3 Hb_001922_030 0.1725540333 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
4 Hb_002097_140 0.1822474025 - - CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]
5 Hb_014720_100 0.1832255998 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
6 Hb_005408_070 0.1843659559 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
7 Hb_123301_010 0.1867681003 - - conserved hypothetical protein [Ricinus communis]
8 Hb_178968_040 0.1902972391 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001148_100 0.192506545 - - -
10 Hb_000027_210 0.1970940471 - - Os01g0689300, partial [Oryza sativa Japonica Group]
11 Hb_005813_010 0.1997970493 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
12 Hb_000754_070 0.2032040353 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002539_040 0.2099910929 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
14 Hb_001053_210 0.2116647854 - - -
15 Hb_032972_010 0.212246099 - - Glycolipid transfer protein, putative [Ricinus communis]
16 Hb_002781_050 0.2130882375 - - cytochrome B5 isoform 1, putative [Ricinus communis]
17 Hb_001493_090 0.2131940229 - - conserved hypothetical protein [Ricinus communis]
18 Hb_147245_010 0.2148153833 - - casein kinase, putative [Ricinus communis]
19 Hb_012362_030 0.2166472734 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
20 Hb_000086_290 0.218343144 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]

Gene co-expression network

sample Hb_002686_260 Hb_002686_260 Hb_005332_040 Hb_005332_040 Hb_002686_260--Hb_005332_040 Hb_001922_030 Hb_001922_030 Hb_002686_260--Hb_001922_030 Hb_002097_140 Hb_002097_140 Hb_002686_260--Hb_002097_140 Hb_014720_100 Hb_014720_100 Hb_002686_260--Hb_014720_100 Hb_005408_070 Hb_005408_070 Hb_002686_260--Hb_005408_070 Hb_123301_010 Hb_123301_010 Hb_002686_260--Hb_123301_010 Hb_029977_020 Hb_029977_020 Hb_005332_040--Hb_029977_020 Hb_000754_070 Hb_000754_070 Hb_005332_040--Hb_000754_070 Hb_001148_100 Hb_001148_100 Hb_005332_040--Hb_001148_100 Hb_002200_070 Hb_002200_070 Hb_005332_040--Hb_002200_070 Hb_005332_040--Hb_005408_070 Hb_031089_020 Hb_031089_020 Hb_001922_030--Hb_031089_020 Hb_000920_160 Hb_000920_160 Hb_001922_030--Hb_000920_160 Hb_001329_180 Hb_001329_180 Hb_001922_030--Hb_001329_180 Hb_000120_940 Hb_000120_940 Hb_001922_030--Hb_000120_940 Hb_026527_010 Hb_026527_010 Hb_001922_030--Hb_026527_010 Hb_000463_120 Hb_000463_120 Hb_001922_030--Hb_000463_120 Hb_001898_140 Hb_001898_140 Hb_002097_140--Hb_001898_140 Hb_005813_010 Hb_005813_010 Hb_002097_140--Hb_005813_010 Hb_002097_140--Hb_001922_030 Hb_000811_080 Hb_000811_080 Hb_002097_140--Hb_000811_080 Hb_002097_140--Hb_031089_020 Hb_080477_080 Hb_080477_080 Hb_002097_140--Hb_080477_080 Hb_178968_040 Hb_178968_040 Hb_014720_100--Hb_178968_040 Hb_017002_010 Hb_017002_010 Hb_014720_100--Hb_017002_010 Hb_008695_220 Hb_008695_220 Hb_014720_100--Hb_008695_220 Hb_005529_020 Hb_005529_020 Hb_014720_100--Hb_005529_020 Hb_003875_010 Hb_003875_010 Hb_014720_100--Hb_003875_010 Hb_002539_040 Hb_002539_040 Hb_005408_070--Hb_002539_040 Hb_000567_180 Hb_000567_180 Hb_005408_070--Hb_000567_180 Hb_000175_470 Hb_000175_470 Hb_005408_070--Hb_000175_470 Hb_001054_090 Hb_001054_090 Hb_005408_070--Hb_001054_090 Hb_000645_200 Hb_000645_200 Hb_005408_070--Hb_000645_200 Hb_005408_070--Hb_005813_010 Hb_000649_340 Hb_000649_340 Hb_123301_010--Hb_000649_340 Hb_003226_130 Hb_003226_130 Hb_123301_010--Hb_003226_130 Hb_002490_030 Hb_002490_030 Hb_123301_010--Hb_002490_030 Hb_000313_280 Hb_000313_280 Hb_123301_010--Hb_000313_280 Hb_126711_010 Hb_126711_010 Hb_123301_010--Hb_126711_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.688996 1.84249 3.90385 17.6918 0.0292408 0.164412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.66689 2.60458 0.680862 4.53506 1.45735

CAGE analysis