Hb_000313_280

Information

Type -
Description -
Location Contig313: 410747-416720
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa014856mg
description hypothetical protein
nr
ID XP_007226145.1
description hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M5XN27
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa014856mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33153: 416200-416729 , PASA_asmbl_33154: 417288-426938 , PASA_asmbl_33155: 417289-426895
cDNA
(Sanger)
(ID:Location)		 011_K23.ab1: 416200-416727 , 049_G08.ab1: 416200-416727

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000313_280 0.0 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
2 Hb_002894_070 0.1010257473 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
3 Hb_002122_060 0.1421166145 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
4 Hb_000015_140 0.1522706897 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
5 Hb_000616_100 0.1525673193 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_000450_170 0.1601924882 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003226_130 0.1725238749 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
8 Hb_001322_010 0.1795696588 - - PREDICTED: uncharacterized protein LOC105632322 [Jatropha curcas]
9 Hb_005227_050 0.1857466928 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000563_140 0.1861103618 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_000740_080 0.1874310471 - - -
12 Hb_000320_030 0.1888721705 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
13 Hb_002936_020 0.1898216365 - - hypothetical protein VITISV_001748 [Vitis vinifera]
14 Hb_156850_040 0.191374305 - - PREDICTED: uncharacterized protein LOC105635251 [Jatropha curcas]
15 Hb_016120_020 0.1935717069 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
16 Hb_122940_010 0.1951471177 - - PREDICTED: 2-isopropylmalate synthase 2, chloroplastic-like [Populus euphratica]
17 Hb_123301_010 0.1978967838 - - conserved hypothetical protein [Ricinus communis]
18 Hb_066207_020 0.1988612562 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
19 Hb_000149_020 0.1988788185 - - Proline-rich receptor-like protein kinase PERK14 [Glycine soja]
20 Hb_003504_010 0.2001565568 - - hypothetical protein POPTR_0013s04290g [Populus trichocarpa]

Gene co-expression network

sample Hb_000313_280 Hb_000313_280 Hb_002894_070 Hb_002894_070 Hb_000313_280--Hb_002894_070 Hb_002122_060 Hb_002122_060 Hb_000313_280--Hb_002122_060 Hb_000015_140 Hb_000015_140 Hb_000313_280--Hb_000015_140 Hb_000616_100 Hb_000616_100 Hb_000313_280--Hb_000616_100 Hb_000450_170 Hb_000450_170 Hb_000313_280--Hb_000450_170 Hb_003226_130 Hb_003226_130 Hb_000313_280--Hb_003226_130 Hb_000740_080 Hb_000740_080 Hb_002894_070--Hb_000740_080 Hb_002894_070--Hb_000616_100 Hb_019299_020 Hb_019299_020 Hb_002894_070--Hb_019299_020 Hb_000563_140 Hb_000563_140 Hb_002894_070--Hb_000563_140 Hb_020831_060 Hb_020831_060 Hb_002894_070--Hb_020831_060 Hb_002122_060--Hb_000616_100 Hb_002122_060--Hb_000015_140 Hb_002122_060--Hb_002894_070 Hb_008536_030 Hb_008536_030 Hb_002122_060--Hb_008536_030 Hb_002054_090 Hb_002054_090 Hb_002122_060--Hb_002054_090 Hb_066207_020 Hb_066207_020 Hb_000015_140--Hb_066207_020 Hb_000015_140--Hb_000740_080 Hb_002768_040 Hb_002768_040 Hb_000015_140--Hb_002768_040 Hb_000897_010 Hb_000897_010 Hb_000015_140--Hb_000897_010 Hb_000015_140--Hb_019299_020 Hb_000149_020 Hb_000149_020 Hb_000616_100--Hb_000149_020 Hb_000373_260 Hb_000373_260 Hb_000616_100--Hb_000373_260 Hb_000616_100--Hb_000740_080 Hb_003582_010 Hb_003582_010 Hb_000616_100--Hb_003582_010 Hb_001195_670 Hb_001195_670 Hb_000450_170--Hb_001195_670 Hb_000320_030 Hb_000320_030 Hb_000450_170--Hb_000320_030 Hb_000450_170--Hb_000015_140 Hb_005529_020 Hb_005529_020 Hb_000450_170--Hb_005529_020 Hb_000450_170--Hb_002894_070 Hb_007382_130 Hb_007382_130 Hb_003226_130--Hb_007382_130 Hb_005227_050 Hb_005227_050 Hb_003226_130--Hb_005227_050 Hb_001810_040 Hb_001810_040 Hb_003226_130--Hb_001810_040 Hb_123301_010 Hb_123301_010 Hb_003226_130--Hb_123301_010 Hb_001097_080 Hb_001097_080 Hb_003226_130--Hb_001097_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158401 5.27397 3.02034 29.4719 0 0.0733411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.806338 1.43741 0.542968 4.10221 0.689489

CAGE analysis