Hb_000563_140

Information

Type -
Description -
Location Contig563: 91761-95331
Sequence    

Annotation

kegg
ID rcu:RCOM_0682780
description Polygalacturonase, putative (EC:3.2.1.67)
nr
ID XP_012084001.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067K7R1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18934 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48893: 92354-92735 , PASA_asmbl_48894: 92736-95453 , PASA_asmbl_48896: 95381-95814
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_140 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_000890_120 0.1411037266 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
3 Hb_004970_100 0.1451786564 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
4 Hb_002900_180 0.1483704053 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
5 Hb_000568_020 0.1512513192 - - PREDICTED: probable aquaporin PIP2-5 [Jatropha curcas]
6 Hb_005214_050 0.1513309769 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
7 Hb_000243_340 0.1524801767 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
8 Hb_000015_140 0.1533910477 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
9 Hb_005916_040 0.155838239 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
10 Hb_007163_050 0.156510337 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
11 Hb_002894_070 0.1568614446 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
12 Hb_020831_060 0.1576752718 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
13 Hb_002304_100 0.1581534029 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
14 Hb_000373_260 0.1591496932 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
15 Hb_085829_010 0.159268679 - - PREDICTED: homeobox protein 2-like [Jatropha curcas]
16 Hb_004031_050 0.159292027 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
17 Hb_019299_020 0.1610230642 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
18 Hb_000163_040 0.1624961906 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
19 Hb_002768_040 0.1627619607 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001645_030 0.1631415973 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]

Gene co-expression network

sample Hb_000563_140 Hb_000563_140 Hb_000890_120 Hb_000890_120 Hb_000563_140--Hb_000890_120 Hb_004970_100 Hb_004970_100 Hb_000563_140--Hb_004970_100 Hb_002900_180 Hb_002900_180 Hb_000563_140--Hb_002900_180 Hb_000568_020 Hb_000568_020 Hb_000563_140--Hb_000568_020 Hb_005214_050 Hb_005214_050 Hb_000563_140--Hb_005214_050 Hb_000243_340 Hb_000243_340 Hb_000563_140--Hb_000243_340 Hb_000157_020 Hb_000157_020 Hb_000890_120--Hb_000157_020 Hb_000086_510 Hb_000086_510 Hb_000890_120--Hb_000086_510 Hb_085829_010 Hb_085829_010 Hb_000890_120--Hb_085829_010 Hb_000890_120--Hb_002900_180 Hb_000017_250 Hb_000017_250 Hb_000890_120--Hb_000017_250 Hb_004705_060 Hb_004705_060 Hb_000890_120--Hb_004705_060 Hb_006026_020 Hb_006026_020 Hb_004970_100--Hb_006026_020 Hb_003777_150 Hb_003777_150 Hb_004970_100--Hb_003777_150 Hb_004970_100--Hb_005214_050 Hb_000373_260 Hb_000373_260 Hb_004970_100--Hb_000373_260 Hb_001417_090 Hb_001417_090 Hb_004970_100--Hb_001417_090 Hb_004031_050 Hb_004031_050 Hb_004970_100--Hb_004031_050 Hb_000462_070 Hb_000462_070 Hb_002900_180--Hb_000462_070 Hb_000003_110 Hb_000003_110 Hb_002900_180--Hb_000003_110 Hb_000260_110 Hb_000260_110 Hb_002900_180--Hb_000260_110 Hb_002900_180--Hb_000017_250 Hb_000540_160 Hb_000540_160 Hb_002900_180--Hb_000540_160 Hb_000834_130 Hb_000834_130 Hb_000568_020--Hb_000834_130 Hb_002304_100 Hb_002304_100 Hb_000568_020--Hb_002304_100 Hb_000568_020--Hb_000243_340 Hb_001247_090 Hb_001247_090 Hb_000568_020--Hb_001247_090 Hb_000568_020--Hb_005214_050 Hb_000568_020--Hb_004031_050 Hb_005214_050--Hb_004031_050 Hb_005214_050--Hb_000373_260 Hb_011355_020 Hb_011355_020 Hb_005214_050--Hb_011355_020 Hb_002897_030 Hb_002897_030 Hb_005214_050--Hb_002897_030 Hb_000243_340--Hb_002304_100 Hb_002601_040 Hb_002601_040 Hb_000243_340--Hb_002601_040 Hb_001645_030 Hb_001645_030 Hb_000243_340--Hb_001645_030 Hb_000243_340--Hb_000834_130 Hb_000339_050 Hb_000339_050 Hb_000243_340--Hb_000339_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150013 1.20717 2.79298 10.0402 0.0120373 0.0341664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.218769 0.236667 0 1.26914 0.633016

CAGE analysis