Hb_000462_070

Information

Type -
Description -
Location Contig462: 108316-110503
Sequence    

Annotation

kegg
ID pop:POPTR_0006s12170g
description hypothetical protein
nr
ID XP_012082507.1
description PREDICTED: probable pectinesterase 15 [Jatropha curcas]
swissprot
ID Q9ZQA3
description Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1
trembl
ID U5GA92
description Pectinesterase OS=Populus trichocarpa GN=POPTR_0006s12170g PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43779: 109043-109953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000462_070 0.0 - - PREDICTED: probable pectinesterase 15 [Jatropha curcas]
2 Hb_000984_130 0.1111253797 - - tubulin [Ornithogalum longebracteatum]
3 Hb_000997_080 0.1165935061 - - PREDICTED: protein WVD2-like 1 isoform X1 [Jatropha curcas]
4 Hb_002900_180 0.11910086 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
5 Hb_000413_120 0.128338591 - - PREDICTED: BTB/POZ domain-containing protein At3g22104-like [Jatropha curcas]
6 Hb_000260_110 0.1302344473 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
7 Hb_000017_250 0.1347630346 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
8 Hb_002701_030 0.1366582599 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
9 Hb_006088_020 0.1410261482 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_003893_180 0.1440271933 - - PREDICTED: uncharacterized protein LOC105648771 [Jatropha curcas]
11 Hb_006002_050 0.1476571392 - - PREDICTED: uncharacterized protein LOC105638083 [Jatropha curcas]
12 Hb_000003_610 0.1509984614 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase [Jatropha curcas]
13 Hb_000011_280 0.1523503114 - - pectinesterase family protein [Populus trichocarpa]
14 Hb_003090_220 0.1527359523 - - PREDICTED: copper transporter 4 [Jatropha curcas]
15 Hb_002783_280 0.152826021 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
16 Hb_002228_120 0.1541115944 - - potassium channel beta, putative [Ricinus communis]
17 Hb_000207_060 0.1545700474 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
18 Hb_002233_160 0.1555197051 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
19 Hb_004705_060 0.1556945345 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
20 Hb_000003_110 0.1566373582 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000462_070 Hb_000462_070 Hb_000984_130 Hb_000984_130 Hb_000462_070--Hb_000984_130 Hb_000997_080 Hb_000997_080 Hb_000462_070--Hb_000997_080 Hb_002900_180 Hb_002900_180 Hb_000462_070--Hb_002900_180 Hb_000413_120 Hb_000413_120 Hb_000462_070--Hb_000413_120 Hb_000260_110 Hb_000260_110 Hb_000462_070--Hb_000260_110 Hb_000017_250 Hb_000017_250 Hb_000462_070--Hb_000017_250 Hb_000984_130--Hb_000997_080 Hb_000011_280 Hb_000011_280 Hb_000984_130--Hb_000011_280 Hb_064546_010 Hb_064546_010 Hb_000984_130--Hb_064546_010 Hb_000735_020 Hb_000735_020 Hb_000984_130--Hb_000735_020 Hb_006788_110 Hb_006788_110 Hb_000984_130--Hb_006788_110 Hb_002701_030 Hb_002701_030 Hb_000984_130--Hb_002701_030 Hb_006002_050 Hb_006002_050 Hb_000997_080--Hb_006002_050 Hb_000003_610 Hb_000003_610 Hb_000997_080--Hb_000003_610 Hb_000997_080--Hb_002701_030 Hb_000997_080--Hb_000011_280 Hb_000997_080--Hb_006788_110 Hb_000003_110 Hb_000003_110 Hb_002900_180--Hb_000003_110 Hb_002900_180--Hb_000260_110 Hb_000890_120 Hb_000890_120 Hb_002900_180--Hb_000890_120 Hb_002900_180--Hb_000017_250 Hb_000540_160 Hb_000540_160 Hb_002900_180--Hb_000540_160 Hb_002228_120 Hb_002228_120 Hb_000413_120--Hb_002228_120 Hb_004933_010 Hb_004933_010 Hb_000413_120--Hb_004933_010 Hb_015292_020 Hb_015292_020 Hb_000413_120--Hb_015292_020 Hb_140627_040 Hb_140627_040 Hb_000413_120--Hb_140627_040 Hb_000333_140 Hb_000333_140 Hb_000413_120--Hb_000333_140 Hb_009062_020 Hb_009062_020 Hb_000413_120--Hb_009062_020 Hb_002233_160 Hb_002233_160 Hb_000260_110--Hb_002233_160 Hb_000260_110--Hb_000011_280 Hb_010883_180 Hb_010883_180 Hb_000260_110--Hb_010883_180 Hb_000069_560 Hb_000069_560 Hb_000260_110--Hb_000069_560 Hb_000017_250--Hb_002701_030 Hb_004705_060 Hb_004705_060 Hb_000017_250--Hb_004705_060 Hb_085829_010 Hb_085829_010 Hb_000017_250--Hb_085829_010 Hb_000853_250 Hb_000853_250 Hb_000017_250--Hb_000853_250 Hb_000162_190 Hb_000162_190 Hb_000017_250--Hb_000162_190 Hb_025787_020 Hb_025787_020 Hb_000017_250--Hb_025787_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0498945 0.0884022 0.671964 2.63219 0.0333426 0.017221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0597205 0.0557017 0.191196 0.433886

CAGE analysis