Hb_000003_110

Information

Type -
Description -
Location Contig3: 70501-72084
Sequence    

Annotation

kegg
ID rcu:RCOM_1454130
description Aspartic proteinase nepenthesin-1 precursor, putative
nr
ID XP_002513132.1
description Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
swissprot
ID Q9LHE3
description Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1
trembl
ID B9RGI0
description Aspartic proteinase nepenthesin-1, putative OS=Ricinus communis GN=RCOM_1454130 PE=4 SV=1
Gene Ontology
ID GO:0004190
description protein aspartic protease in guard cell 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31372: 70335-71553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000003_110 0.0 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
2 Hb_061222_010 0.1149276224 - - hypothetical protein RCOM_0012650 [Ricinus communis]
3 Hb_005784_060 0.1174075417 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
4 Hb_002900_180 0.1198577046 transcription factor TF Family: LIM LIM1 [Hevea brasiliensis]
5 Hb_005253_020 0.1217625538 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
6 Hb_002292_080 0.124648698 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_001616_100 0.130587689 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
8 Hb_002233_160 0.1361792919 - - PREDICTED: uncharacterized protein LOC105633094 [Jatropha curcas]
9 Hb_000017_250 0.1377811694 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
10 Hb_002701_030 0.1383431601 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_000015_190 0.1421607251 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
12 Hb_000984_130 0.142817269 - - tubulin [Ornithogalum longebracteatum]
13 Hb_005000_280 0.1428405248 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
14 Hb_000997_240 0.1446112472 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
15 Hb_000025_160 0.1464464665 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
16 Hb_000735_020 0.146481482 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
17 Hb_001348_010 0.1468524217 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
18 Hb_001769_070 0.1471913019 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
19 Hb_012395_050 0.1490115949 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
20 Hb_000260_110 0.1493860189 - - Nodulation receptor kinase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000003_110 Hb_000003_110 Hb_061222_010 Hb_061222_010 Hb_000003_110--Hb_061222_010 Hb_005784_060 Hb_005784_060 Hb_000003_110--Hb_005784_060 Hb_002900_180 Hb_002900_180 Hb_000003_110--Hb_002900_180 Hb_005253_020 Hb_005253_020 Hb_000003_110--Hb_005253_020 Hb_002292_080 Hb_002292_080 Hb_000003_110--Hb_002292_080 Hb_001616_100 Hb_001616_100 Hb_000003_110--Hb_001616_100 Hb_000025_160 Hb_000025_160 Hb_061222_010--Hb_000025_160 Hb_031089_020 Hb_031089_020 Hb_061222_010--Hb_031089_020 Hb_158092_040 Hb_158092_040 Hb_061222_010--Hb_158092_040 Hb_061222_010--Hb_005784_060 Hb_000997_240 Hb_000997_240 Hb_061222_010--Hb_000997_240 Hb_007138_030 Hb_007138_030 Hb_005784_060--Hb_007138_030 Hb_000975_200 Hb_000975_200 Hb_005784_060--Hb_000975_200 Hb_005784_060--Hb_000997_240 Hb_179960_010 Hb_179960_010 Hb_005784_060--Hb_179960_010 Hb_005000_280 Hb_005000_280 Hb_005784_060--Hb_005000_280 Hb_000462_070 Hb_000462_070 Hb_002900_180--Hb_000462_070 Hb_000260_110 Hb_000260_110 Hb_002900_180--Hb_000260_110 Hb_000890_120 Hb_000890_120 Hb_002900_180--Hb_000890_120 Hb_000017_250 Hb_000017_250 Hb_002900_180--Hb_000017_250 Hb_000540_160 Hb_000540_160 Hb_002900_180--Hb_000540_160 Hb_005253_020--Hb_002292_080 Hb_012518_080 Hb_012518_080 Hb_005253_020--Hb_012518_080 Hb_005253_020--Hb_000017_250 Hb_000735_020 Hb_000735_020 Hb_005253_020--Hb_000735_020 Hb_000003_210 Hb_000003_210 Hb_005253_020--Hb_000003_210 Hb_002292_080--Hb_012518_080 Hb_001348_010 Hb_001348_010 Hb_002292_080--Hb_001348_010 Hb_000093_090 Hb_000093_090 Hb_002292_080--Hb_000093_090 Hb_002292_080--Hb_000735_020 Hb_000162_190 Hb_000162_190 Hb_002292_080--Hb_000162_190 Hb_003935_040 Hb_003935_040 Hb_002292_080--Hb_003935_040 Hb_000015_190 Hb_000015_190 Hb_001616_100--Hb_000015_190 Hb_002304_100 Hb_002304_100 Hb_001616_100--Hb_002304_100 Hb_000157_020 Hb_000157_020 Hb_001616_100--Hb_000157_020 Hb_000243_340 Hb_000243_340 Hb_001616_100--Hb_000243_340 Hb_000805_270 Hb_000805_270 Hb_001616_100--Hb_000805_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0167709 0.457054 2.309 7.2461 0.0325224 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0765606 0.240904 0.224616 1.53065 1.62461

CAGE analysis