Hb_005784_060

Information

Type -
Description -
Location Contig5784: 58790-60046
Sequence    

Annotation

kegg
ID rcu:RCOM_1459290
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012086074.1
description PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
swissprot
ID Q9FLF4
description U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1
trembl
ID A0A067K1K5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22231 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49743: 58950-59299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005784_060 0.0 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
2 Hb_007138_030 0.1171113139 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
3 Hb_000003_110 0.1174075417 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_000975_200 0.1212842716 - - PREDICTED: uncharacterized protein LOC105628231 isoform X2 [Jatropha curcas]
5 Hb_000997_240 0.1252041126 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
6 Hb_179960_010 0.1262336248 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
7 Hb_005000_280 0.1302136496 - - PREDICTED: uncharacterized protein LOC105637905 [Jatropha curcas]
8 Hb_158092_040 0.1302525624 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
9 Hb_002203_020 0.1313255647 - - conserved hypothetical protein [Ricinus communis]
10 Hb_061222_010 0.1359913747 - - hypothetical protein RCOM_0012650 [Ricinus communis]
11 Hb_012395_050 0.1417669674 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
12 Hb_031089_020 0.1469003128 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
13 Hb_134014_010 0.1549673632 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
14 Hb_002809_080 0.1551550064 - - conserved hypothetical protein [Ricinus communis]
15 Hb_080477_080 0.1566136519 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
16 Hb_029223_040 0.1576625402 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
17 Hb_001616_100 0.1604161555 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
18 Hb_001769_070 0.162028909 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like isoform X1 [Jatropha curcas]
19 Hb_000329_010 0.1623901579 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
20 Hb_001493_140 0.1637120895 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_005784_060 Hb_005784_060 Hb_007138_030 Hb_007138_030 Hb_005784_060--Hb_007138_030 Hb_000003_110 Hb_000003_110 Hb_005784_060--Hb_000003_110 Hb_000975_200 Hb_000975_200 Hb_005784_060--Hb_000975_200 Hb_000997_240 Hb_000997_240 Hb_005784_060--Hb_000997_240 Hb_179960_010 Hb_179960_010 Hb_005784_060--Hb_179960_010 Hb_005000_280 Hb_005000_280 Hb_005784_060--Hb_005000_280 Hb_009545_030 Hb_009545_030 Hb_007138_030--Hb_009545_030 Hb_080477_080 Hb_080477_080 Hb_007138_030--Hb_080477_080 Hb_000749_160 Hb_000749_160 Hb_007138_030--Hb_000749_160 Hb_158092_040 Hb_158092_040 Hb_007138_030--Hb_158092_040 Hb_007138_030--Hb_179960_010 Hb_061222_010 Hb_061222_010 Hb_000003_110--Hb_061222_010 Hb_002900_180 Hb_002900_180 Hb_000003_110--Hb_002900_180 Hb_005253_020 Hb_005253_020 Hb_000003_110--Hb_005253_020 Hb_002292_080 Hb_002292_080 Hb_000003_110--Hb_002292_080 Hb_001616_100 Hb_001616_100 Hb_000003_110--Hb_001616_100 Hb_001898_140 Hb_001898_140 Hb_000975_200--Hb_001898_140 Hb_000975_200--Hb_061222_010 Hb_000975_200--Hb_000003_110 Hb_000069_150 Hb_000069_150 Hb_000975_200--Hb_000069_150 Hb_010883_180 Hb_010883_180 Hb_000975_200--Hb_010883_180 Hb_002999_080 Hb_002999_080 Hb_000997_240--Hb_002999_080 Hb_001348_010 Hb_001348_010 Hb_000997_240--Hb_001348_010 Hb_000997_240--Hb_005000_280 Hb_029142_040 Hb_029142_040 Hb_000997_240--Hb_029142_040 Hb_155444_010 Hb_155444_010 Hb_000997_240--Hb_155444_010 Hb_012395_050 Hb_012395_050 Hb_000997_240--Hb_012395_050 Hb_179960_010--Hb_012395_050 Hb_001178_090 Hb_001178_090 Hb_179960_010--Hb_001178_090 Hb_002203_020 Hb_002203_020 Hb_179960_010--Hb_002203_020 Hb_179960_010--Hb_158092_040 Hb_179960_010--Hb_155444_010 Hb_002518_020 Hb_002518_020 Hb_005000_280--Hb_002518_020 Hb_002809_080 Hb_002809_080 Hb_005000_280--Hb_002809_080 Hb_001769_070 Hb_001769_070 Hb_005000_280--Hb_001769_070 Hb_000076_280 Hb_000076_280 Hb_005000_280--Hb_000076_280 Hb_000329_010 Hb_000329_010 Hb_005000_280--Hb_000329_010 Hb_027400_020 Hb_027400_020 Hb_005000_280--Hb_027400_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.09236 1.26076 2.18731 9.04506 0.0157551 0.0147721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.115166 0.362378 0.506757 2.90086 1.94227

CAGE analysis