Hb_000093_090

Information

Type -
Description -
Location Contig93: 126057-129054
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09720g
description POPTRDRAFT_564316; REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3 family protein
nr
ID XP_011018877.1
description PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
swissprot
ID O04300
description Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1
trembl
ID B9HIG2
description REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3 family protein OS=Populus trichocarpa GN=POPTR_0008s09720g PE=4 SV=1
Gene Ontology
ID GO:0016866
description alpha- -glucan-protein synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62815: 125930-129051 , PASA_asmbl_62816: 126826-126992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000093_090 0.0 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
2 Hb_002292_080 0.0896694898 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
3 Hb_000162_190 0.1026667019 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
4 Hb_000853_250 0.1135471495 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
5 Hb_003935_040 0.1159316469 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP [Jatropha curcas]
6 Hb_001141_440 0.1225918189 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
7 Hb_030685_010 0.1227281691 - - -
8 Hb_004055_090 0.1228705657 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
9 Hb_012518_080 0.1249114209 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like [Jatropha curcas]
10 Hb_000017_250 0.1256738926 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
11 Hb_003728_110 0.1296219158 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]
12 Hb_025787_020 0.132173392 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
13 Hb_001025_100 0.1325636443 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
14 Hb_015934_080 0.1359135107 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
15 Hb_000103_330 0.1380790538 - - PREDICTED: meiotic recombination protein DMC1 homolog isoform X1 [Glycine max]
16 Hb_000020_050 0.1384636699 - - PREDICTED: expansin-A6 [Jatropha curcas]
17 Hb_001348_010 0.1405612705 - - PREDICTED: lysM domain-containing GPI-anchored protein 1 [Jatropha curcas]
18 Hb_000984_130 0.1409701163 - - tubulin [Ornithogalum longebracteatum]
19 Hb_000345_230 0.141147247 - - -
20 Hb_000735_020 0.1424599194 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000093_090 Hb_000093_090 Hb_002292_080 Hb_002292_080 Hb_000093_090--Hb_002292_080 Hb_000162_190 Hb_000162_190 Hb_000093_090--Hb_000162_190 Hb_000853_250 Hb_000853_250 Hb_000093_090--Hb_000853_250 Hb_003935_040 Hb_003935_040 Hb_000093_090--Hb_003935_040 Hb_001141_440 Hb_001141_440 Hb_000093_090--Hb_001141_440 Hb_030685_010 Hb_030685_010 Hb_000093_090--Hb_030685_010 Hb_012518_080 Hb_012518_080 Hb_002292_080--Hb_012518_080 Hb_001348_010 Hb_001348_010 Hb_002292_080--Hb_001348_010 Hb_000735_020 Hb_000735_020 Hb_002292_080--Hb_000735_020 Hb_002292_080--Hb_000162_190 Hb_002292_080--Hb_003935_040 Hb_000162_190--Hb_003935_040 Hb_025787_020 Hb_025787_020 Hb_000162_190--Hb_025787_020 Hb_009252_080 Hb_009252_080 Hb_000162_190--Hb_009252_080 Hb_000162_190--Hb_001141_440 Hb_043552_010 Hb_043552_010 Hb_000162_190--Hb_043552_010 Hb_000310_110 Hb_000310_110 Hb_000162_190--Hb_000310_110 Hb_000853_250--Hb_001141_440 Hb_000062_280 Hb_000062_280 Hb_000853_250--Hb_000062_280 Hb_004055_090 Hb_004055_090 Hb_000853_250--Hb_004055_090 Hb_000853_250--Hb_000162_190 Hb_000017_250 Hb_000017_250 Hb_000853_250--Hb_000017_250 Hb_000853_250--Hb_025787_020 Hb_000345_230 Hb_000345_230 Hb_003935_040--Hb_000345_230 Hb_003935_040--Hb_000310_110 Hb_000020_050 Hb_000020_050 Hb_003935_040--Hb_000020_050 Hb_015934_080 Hb_015934_080 Hb_003935_040--Hb_015934_080 Hb_009189_100 Hb_009189_100 Hb_003935_040--Hb_009189_100 Hb_001141_440--Hb_000345_230 Hb_001971_040 Hb_001971_040 Hb_001141_440--Hb_001971_040 Hb_001141_440--Hb_000062_280 Hb_001141_440--Hb_009252_080 Hb_003540_120 Hb_003540_120 Hb_030685_010--Hb_003540_120 Hb_003728_110 Hb_003728_110 Hb_030685_010--Hb_003728_110 Hb_001188_050 Hb_001188_050 Hb_030685_010--Hb_001188_050 Hb_003055_080 Hb_003055_080 Hb_030685_010--Hb_003055_080 Hb_002749_040 Hb_002749_040 Hb_030685_010--Hb_002749_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58224 3.95788 45.7602 87.4869 2.39481 1.16588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372636 0.439705 0.820834 17.6504 14.4328

CAGE analysis