Hb_000320_030

Information

Type -
Description -
Location Contig320: 38937-45203
Sequence    

Annotation

kegg
ID rcu:RCOM_0903730
description Aspartic proteinase precursor, putative (EC:3.4.23.40)
nr
ID XP_012091315.1
description PREDICTED: aspartic proteinase-like [Jatropha curcas]
swissprot
ID O65390
description Aspartic proteinase A1 OS=Arabidopsis thaliana GN=APA1 PE=1 SV=1
trembl
ID A0A067JDB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21189 PE=3 SV=1
Gene Ontology
ID GO:0005783
description aspartic proteinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33785: 42546-45100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_030 0.0 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
2 Hb_000450_170 0.1513358458 - - conserved hypothetical protein [Ricinus communis]
3 Hb_179960_010 0.159280755 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
4 Hb_003647_040 0.1756019803 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000015_140 0.176736912 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
6 Hb_002592_050 0.1777664053 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
7 Hb_001645_030 0.1811852119 - - PREDICTED: probable auxin efflux carrier component 1b [Jatropha curcas]
8 Hb_000028_620 0.1859179164 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002894_070 0.1859743134 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein B [Jatropha curcas]
10 Hb_002304_100 0.1863083674 - - hypothetical protein JCGZ_21524 [Jatropha curcas]
11 Hb_002122_060 0.1871479446 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
12 Hb_001491_040 0.1881976436 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
13 Hb_000313_280 0.1888721705 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
14 Hb_000243_340 0.1897121632 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
15 Hb_001616_100 0.1917096949 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
16 Hb_000866_320 0.1924614268 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_000563_140 0.1925844631 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
18 Hb_002601_040 0.192793997 - - hypothetical protein JCGZ_06197 [Jatropha curcas]
19 Hb_000373_260 0.1930316232 - - hypothetical protein POPTR_0002s06820g [Populus trichocarpa]
20 Hb_000032_430 0.1932130007 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000320_030 Hb_000320_030 Hb_000450_170 Hb_000450_170 Hb_000320_030--Hb_000450_170 Hb_179960_010 Hb_179960_010 Hb_000320_030--Hb_179960_010 Hb_003647_040 Hb_003647_040 Hb_000320_030--Hb_003647_040 Hb_000015_140 Hb_000015_140 Hb_000320_030--Hb_000015_140 Hb_002592_050 Hb_002592_050 Hb_000320_030--Hb_002592_050 Hb_001645_030 Hb_001645_030 Hb_000320_030--Hb_001645_030 Hb_001195_670 Hb_001195_670 Hb_000450_170--Hb_001195_670 Hb_000313_280 Hb_000313_280 Hb_000450_170--Hb_000313_280 Hb_000450_170--Hb_000015_140 Hb_005529_020 Hb_005529_020 Hb_000450_170--Hb_005529_020 Hb_002894_070 Hb_002894_070 Hb_000450_170--Hb_002894_070 Hb_012395_050 Hb_012395_050 Hb_179960_010--Hb_012395_050 Hb_001178_090 Hb_001178_090 Hb_179960_010--Hb_001178_090 Hb_005784_060 Hb_005784_060 Hb_179960_010--Hb_005784_060 Hb_002203_020 Hb_002203_020 Hb_179960_010--Hb_002203_020 Hb_158092_040 Hb_158092_040 Hb_179960_010--Hb_158092_040 Hb_155444_010 Hb_155444_010 Hb_179960_010--Hb_155444_010 Hb_012727_010 Hb_012727_010 Hb_003647_040--Hb_012727_010 Hb_001491_040 Hb_001491_040 Hb_003647_040--Hb_001491_040 Hb_002119_040 Hb_002119_040 Hb_003647_040--Hb_002119_040 Hb_000032_430 Hb_000032_430 Hb_003647_040--Hb_000032_430 Hb_000866_320 Hb_000866_320 Hb_003647_040--Hb_000866_320 Hb_000189_070 Hb_000189_070 Hb_003647_040--Hb_000189_070 Hb_066207_020 Hb_066207_020 Hb_000015_140--Hb_066207_020 Hb_000740_080 Hb_000740_080 Hb_000015_140--Hb_000740_080 Hb_002768_040 Hb_002768_040 Hb_000015_140--Hb_002768_040 Hb_000897_010 Hb_000897_010 Hb_000015_140--Hb_000897_010 Hb_019299_020 Hb_019299_020 Hb_000015_140--Hb_019299_020 Hb_002122_060 Hb_002122_060 Hb_000015_140--Hb_002122_060 Hb_005839_030 Hb_005839_030 Hb_002592_050--Hb_005839_030 Hb_003050_100 Hb_003050_100 Hb_002592_050--Hb_003050_100 Hb_032208_050 Hb_032208_050 Hb_002592_050--Hb_032208_050 Hb_002592_050--Hb_155444_010 Hb_002025_050 Hb_002025_050 Hb_002592_050--Hb_002025_050 Hb_002592_050--Hb_001178_090 Hb_002304_100 Hb_002304_100 Hb_001645_030--Hb_002304_100 Hb_000243_340 Hb_000243_340 Hb_001645_030--Hb_000243_340 Hb_024868_010 Hb_024868_010 Hb_001645_030--Hb_024868_010 Hb_000834_130 Hb_000834_130 Hb_001645_030--Hb_000834_130 Hb_002601_040 Hb_002601_040 Hb_001645_030--Hb_002601_040 Hb_000568_020 Hb_000568_020 Hb_001645_030--Hb_000568_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.697573 5.07197 7.36821 39.0982 0.938796 0.436573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.751982 0.279412 1.37387 11.1484 1.35736

CAGE analysis