Hb_002592_050

Information

Type -
Description -
Location Contig2592: 95643-96245
Sequence    

Annotation

kegg
ID rcu:RCOM_1119530
description ubiquitin-protein ligase, putative
nr
ID XP_012080646.1
description PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
swissprot
ID P43254
description E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2
trembl
ID A0A067K3M1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13754 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26889: 96093-96588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002592_050 0.0 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
2 Hb_005839_030 0.0960600227 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
3 Hb_003050_100 0.0966830171 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
4 Hb_032208_050 0.1306979559 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
5 Hb_155444_010 0.1356843608 - - -
6 Hb_002025_050 0.1392101933 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001178_090 0.139673873 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
8 Hb_000749_160 0.1411688942 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_029142_040 0.1419509293 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
10 Hb_179960_010 0.1425118938 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
11 Hb_005144_080 0.1457542373 - - Serine carboxypeptidase, putative [Ricinus communis]
12 Hb_000956_070 0.147165526 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
13 Hb_009838_120 0.1480690548 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
14 Hb_024868_010 0.1480745034 - - protein kinase, putative [Ricinus communis]
15 Hb_002681_120 0.1499922176 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
16 Hb_012395_050 0.1515063293 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
17 Hb_003647_040 0.1547398661 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005333_080 0.1555115671 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004079_100 0.1587909611 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
20 Hb_003964_060 0.1589200855 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]

Gene co-expression network

sample Hb_002592_050 Hb_002592_050 Hb_005839_030 Hb_005839_030 Hb_002592_050--Hb_005839_030 Hb_003050_100 Hb_003050_100 Hb_002592_050--Hb_003050_100 Hb_032208_050 Hb_032208_050 Hb_002592_050--Hb_032208_050 Hb_155444_010 Hb_155444_010 Hb_002592_050--Hb_155444_010 Hb_002025_050 Hb_002025_050 Hb_002592_050--Hb_002025_050 Hb_001178_090 Hb_001178_090 Hb_002592_050--Hb_001178_090 Hb_000696_030 Hb_000696_030 Hb_005839_030--Hb_000696_030 Hb_001157_190 Hb_001157_190 Hb_005839_030--Hb_001157_190 Hb_005144_080 Hb_005144_080 Hb_005839_030--Hb_005144_080 Hb_011129_020 Hb_011129_020 Hb_005839_030--Hb_011129_020 Hb_004079_100 Hb_004079_100 Hb_005839_030--Hb_004079_100 Hb_003050_100--Hb_032208_050 Hb_003050_100--Hb_001178_090 Hb_003050_100--Hb_005839_030 Hb_000032_430 Hb_000032_430 Hb_003050_100--Hb_000032_430 Hb_001564_090 Hb_001564_090 Hb_003050_100--Hb_001564_090 Hb_034280_010 Hb_034280_010 Hb_032208_050--Hb_034280_010 Hb_005694_180 Hb_005694_180 Hb_032208_050--Hb_005694_180 Hb_032208_050--Hb_001178_090 Hb_003647_040 Hb_003647_040 Hb_032208_050--Hb_003647_040 Hb_012395_050 Hb_012395_050 Hb_155444_010--Hb_012395_050 Hb_029142_040 Hb_029142_040 Hb_155444_010--Hb_029142_040 Hb_002518_020 Hb_002518_020 Hb_155444_010--Hb_002518_020 Hb_000645_160 Hb_000645_160 Hb_155444_010--Hb_000645_160 Hb_002749_040 Hb_002749_040 Hb_155444_010--Hb_002749_040 Hb_000997_240 Hb_000997_240 Hb_155444_010--Hb_000997_240 Hb_003964_060 Hb_003964_060 Hb_002025_050--Hb_003964_060 Hb_009838_120 Hb_009838_120 Hb_002025_050--Hb_009838_120 Hb_001645_030 Hb_001645_030 Hb_002025_050--Hb_001645_030 Hb_000866_320 Hb_000866_320 Hb_002025_050--Hb_000866_320 Hb_000956_070 Hb_000956_070 Hb_002025_050--Hb_000956_070 Hb_179960_010 Hb_179960_010 Hb_001178_090--Hb_179960_010 Hb_001178_090--Hb_000032_430 Hb_000203_070 Hb_000203_070 Hb_001178_090--Hb_000203_070 Hb_001178_090--Hb_012395_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.474957 2.78311 6.14839 15.9786 0.573596 0.563979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20046 0.157546 0.137873 9.07486 2.28848

CAGE analysis