Hb_032208_050

Information

Type -
Description -
Location Contig32208: 22961-29125
Sequence    

Annotation

kegg
ID tcc:TCM_040040
description O-Glycosyl hydrolases family 17 protein isoform 1
nr
ID XP_012067108.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
swissprot
ID Q94CD8
description Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1
trembl
ID A0A067L109
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01900 PE=3 SV=1
Gene Ontology
ID GO:0046658
description glucan endo- -beta-glucosidase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34108: 23298-29398 , PASA_asmbl_34110: 27982-28988
cDNA
(Sanger)
(ID:Location)		 035_G21.ab1: 23358-27227 , 044_H06.ab1: 23358-27304

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032208_050 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
2 Hb_002592_050 0.1306979559 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
3 Hb_003050_100 0.1348725244 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
4 Hb_034280_010 0.1489405592 - - Protein bem46, putative [Ricinus communis]
5 Hb_005694_180 0.1621052117 - - PREDICTED: cytochrome b5 [Jatropha curcas]
6 Hb_001178_090 0.1670765573 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
7 Hb_003647_040 0.1744282592 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000032_430 0.1751161547 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007044_220 0.1781004008 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
10 Hb_005839_030 0.1807486878 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
11 Hb_010872_040 0.1848561852 - - hypothetical protein F775_31993 [Aegilops tauschii]
12 Hb_028115_010 0.185464175 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002681_120 0.1855198847 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
14 Hb_002217_040 0.1864741972 - - PREDICTED: boron transporter 1-like [Jatropha curcas]
15 Hb_002739_040 0.1894491251 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
16 Hb_000749_160 0.1913498852 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_000237_020 0.1927231333 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
18 Hb_179960_010 0.1931735995 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Jatropha curcas]
19 Hb_080477_080 0.1946257685 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
20 Hb_159582_010 0.1958415233 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_032208_050 Hb_032208_050 Hb_002592_050 Hb_002592_050 Hb_032208_050--Hb_002592_050 Hb_003050_100 Hb_003050_100 Hb_032208_050--Hb_003050_100 Hb_034280_010 Hb_034280_010 Hb_032208_050--Hb_034280_010 Hb_005694_180 Hb_005694_180 Hb_032208_050--Hb_005694_180 Hb_001178_090 Hb_001178_090 Hb_032208_050--Hb_001178_090 Hb_003647_040 Hb_003647_040 Hb_032208_050--Hb_003647_040 Hb_005839_030 Hb_005839_030 Hb_002592_050--Hb_005839_030 Hb_002592_050--Hb_003050_100 Hb_155444_010 Hb_155444_010 Hb_002592_050--Hb_155444_010 Hb_002025_050 Hb_002025_050 Hb_002592_050--Hb_002025_050 Hb_002592_050--Hb_001178_090 Hb_003050_100--Hb_001178_090 Hb_003050_100--Hb_005839_030 Hb_000032_430 Hb_000032_430 Hb_003050_100--Hb_000032_430 Hb_001564_090 Hb_001564_090 Hb_003050_100--Hb_001564_090 Hb_003972_040 Hb_003972_040 Hb_034280_010--Hb_003972_040 Hb_034280_010--Hb_003050_100 Hb_034280_010--Hb_000032_430 Hb_028115_010 Hb_028115_010 Hb_034280_010--Hb_028115_010 Hb_000110_380 Hb_000110_380 Hb_034280_010--Hb_000110_380 Hb_003430_080 Hb_003430_080 Hb_005694_180--Hb_003430_080 Hb_034507_060 Hb_034507_060 Hb_005694_180--Hb_034507_060 Hb_023226_030 Hb_023226_030 Hb_005694_180--Hb_023226_030 Hb_001195_420 Hb_001195_420 Hb_005694_180--Hb_001195_420 Hb_000309_030 Hb_000309_030 Hb_005694_180--Hb_000309_030 Hb_012760_090 Hb_012760_090 Hb_005694_180--Hb_012760_090 Hb_179960_010 Hb_179960_010 Hb_001178_090--Hb_179960_010 Hb_001178_090--Hb_000032_430 Hb_000203_070 Hb_000203_070 Hb_001178_090--Hb_000203_070 Hb_012395_050 Hb_012395_050 Hb_001178_090--Hb_012395_050 Hb_012727_010 Hb_012727_010 Hb_003647_040--Hb_012727_010 Hb_001491_040 Hb_001491_040 Hb_003647_040--Hb_001491_040 Hb_002119_040 Hb_002119_040 Hb_003647_040--Hb_002119_040 Hb_003647_040--Hb_000032_430 Hb_000866_320 Hb_000866_320 Hb_003647_040--Hb_000866_320 Hb_000189_070 Hb_000189_070 Hb_003647_040--Hb_000189_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.71483 3.72599 5.92803 18.2325 0.782949 1.49932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51793 0.691422 0.197795 12.4645 1.71869

CAGE analysis