Hb_000110_380

Information

Type -
Description -
Location Contig110: 409452-410042
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13590g
description POPTRDRAFT_566632; hypothetical protein
nr
ID XP_012082080.1
description PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2X8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18319 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000110_380 0.0 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
2 Hb_005813_010 0.1643268054 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
3 Hb_032225_030 0.1737273537 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
4 Hb_028001_020 0.1768224892 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]
5 Hb_002539_040 0.1839090635 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
6 Hb_001170_010 0.1861788819 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_005408_070 0.186324706 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
8 Hb_002602_030 0.1951813606 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
9 Hb_001014_190 0.1954633936 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
10 Hb_034280_010 0.1955968769 - - Protein bem46, putative [Ricinus communis]
11 Hb_028115_010 0.1958691479 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000567_180 0.2012972046 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
13 Hb_026549_050 0.2032535526 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
14 Hb_032208_050 0.2047971176 - - PREDICTED: glucan endo-1,3-beta-glucosidase 4 isoform X3 [Jatropha curcas]
15 Hb_001366_060 0.2084142206 - - -
16 Hb_001054_090 0.209374242 - - Potassium channel SKOR, putative [Ricinus communis]
17 Hb_004724_450 0.2105291623 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
18 Hb_000175_470 0.2112562553 - - lactoylglutathione lyase, putative [Ricinus communis]
19 Hb_000110_290 0.2120795085 - - conserved hypothetical protein [Ricinus communis]
20 Hb_105660_010 0.2152176462 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000110_380 Hb_000110_380 Hb_005813_010 Hb_005813_010 Hb_000110_380--Hb_005813_010 Hb_032225_030 Hb_032225_030 Hb_000110_380--Hb_032225_030 Hb_028001_020 Hb_028001_020 Hb_000110_380--Hb_028001_020 Hb_002539_040 Hb_002539_040 Hb_000110_380--Hb_002539_040 Hb_001170_010 Hb_001170_010 Hb_000110_380--Hb_001170_010 Hb_005408_070 Hb_005408_070 Hb_000110_380--Hb_005408_070 Hb_002097_140 Hb_002097_140 Hb_005813_010--Hb_002097_140 Hb_007138_030 Hb_007138_030 Hb_005813_010--Hb_007138_030 Hb_122940_010 Hb_122940_010 Hb_005813_010--Hb_122940_010 Hb_005813_010--Hb_005408_070 Hb_000567_180 Hb_000567_180 Hb_005813_010--Hb_000567_180 Hb_042509_020 Hb_042509_020 Hb_032225_030--Hb_042509_020 Hb_007545_140 Hb_007545_140 Hb_032225_030--Hb_007545_140 Hb_001369_140 Hb_001369_140 Hb_032225_030--Hb_001369_140 Hb_032225_030--Hb_001170_010 Hb_030982_060 Hb_030982_060 Hb_032225_030--Hb_030982_060 Hb_005779_030 Hb_005779_030 Hb_028001_020--Hb_005779_030 Hb_000465_260 Hb_000465_260 Hb_028001_020--Hb_000465_260 Hb_000863_030 Hb_000863_030 Hb_028001_020--Hb_000863_030 Hb_000000_110 Hb_000000_110 Hb_028001_020--Hb_000000_110 Hb_000025_400 Hb_000025_400 Hb_028001_020--Hb_000025_400 Hb_002539_040--Hb_005408_070 Hb_000175_470 Hb_000175_470 Hb_002539_040--Hb_000175_470 Hb_001148_090 Hb_001148_090 Hb_002539_040--Hb_001148_090 Hb_002539_040--Hb_000567_180 Hb_000889_010 Hb_000889_010 Hb_002539_040--Hb_000889_010 Hb_001148_100 Hb_001148_100 Hb_002539_040--Hb_001148_100 Hb_009736_010 Hb_009736_010 Hb_001170_010--Hb_009736_010 Hb_004195_090 Hb_004195_090 Hb_001170_010--Hb_004195_090 Hb_029921_030 Hb_029921_030 Hb_001170_010--Hb_029921_030 Hb_001170_010--Hb_030982_060 Hb_005408_070--Hb_000567_180 Hb_005408_070--Hb_000175_470 Hb_001054_090 Hb_001054_090 Hb_005408_070--Hb_001054_090 Hb_000645_200 Hb_000645_200 Hb_005408_070--Hb_000645_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.82289 28.8567 13.5239 103.683 3.42462 4.16618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.57714 24.9994 2.54948 63.635 7.3645

CAGE analysis