Hb_005408_070

Information

Type transcription factor
Description TF Family: OFP
Location Contig5408: 96408-97643
Sequence    

Annotation

kegg
ID tcc:TCM_019730
description AF4/FMR2 family member 1
nr
ID XP_012089698.1
description PREDICTED: transcription repressor OFP4 [Jatropha curcas]
swissprot
ID F4HNU8
description Transcription repressor OFP4 OS=Arabidopsis thaliana GN=OFP4 PE=1 SV=1
trembl
ID A0A067JTC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00366 PE=4 SV=1
Gene Ontology
ID GO:0003677
description ovate family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005408_070 0.0 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
2 Hb_002539_040 0.0893914307 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
3 Hb_000567_180 0.1452252691 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
4 Hb_000175_470 0.14552814 - - lactoylglutathione lyase, putative [Ricinus communis]
5 Hb_001054_090 0.16972344 - - Potassium channel SKOR, putative [Ricinus communis]
6 Hb_000645_200 0.169974587 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
7 Hb_005813_010 0.17195952 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_001148_100 0.1743889288 - - -
9 Hb_001148_090 0.1760803605 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
10 Hb_005332_040 0.177028152 - - hypothetical protein RCOM_0530890 [Ricinus communis]
11 Hb_012807_130 0.1828872064 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
12 Hb_047583_010 0.1831342417 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
13 Hb_000059_300 0.1832581093 - - caspase, putative [Ricinus communis]
14 Hb_002602_030 0.1839406898 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
15 Hb_002686_260 0.1843659559 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
16 Hb_002097_140 0.1856663041 - - CHY zinc finger family protein, expressed [Oryza sativa Japonica Group]
17 Hb_000110_380 0.186324706 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
18 Hb_018272_060 0.186903513 - - PREDICTED: mavicyanin-like [Citrus sinensis]
19 Hb_002835_340 0.1900436108 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
20 Hb_001053_210 0.1901369732 - - -

Gene co-expression network

sample Hb_005408_070 Hb_005408_070 Hb_002539_040 Hb_002539_040 Hb_005408_070--Hb_002539_040 Hb_000567_180 Hb_000567_180 Hb_005408_070--Hb_000567_180 Hb_000175_470 Hb_000175_470 Hb_005408_070--Hb_000175_470 Hb_001054_090 Hb_001054_090 Hb_005408_070--Hb_001054_090 Hb_000645_200 Hb_000645_200 Hb_005408_070--Hb_000645_200 Hb_005813_010 Hb_005813_010 Hb_005408_070--Hb_005813_010 Hb_002539_040--Hb_000175_470 Hb_001148_090 Hb_001148_090 Hb_002539_040--Hb_001148_090 Hb_002539_040--Hb_000567_180 Hb_000889_010 Hb_000889_010 Hb_002539_040--Hb_000889_010 Hb_001148_100 Hb_001148_100 Hb_002539_040--Hb_001148_100 Hb_001922_060 Hb_001922_060 Hb_000567_180--Hb_001922_060 Hb_000567_180--Hb_000175_470 Hb_000216_050 Hb_000216_050 Hb_000567_180--Hb_000216_050 Hb_026549_050 Hb_026549_050 Hb_000567_180--Hb_026549_050 Hb_000175_470--Hb_001148_100 Hb_143766_080 Hb_143766_080 Hb_000175_470--Hb_143766_080 Hb_172706_020 Hb_172706_020 Hb_000175_470--Hb_172706_020 Hb_004522_030 Hb_004522_030 Hb_001054_090--Hb_004522_030 Hb_009646_010 Hb_009646_010 Hb_001054_090--Hb_009646_010 Hb_003710_020 Hb_003710_020 Hb_001054_090--Hb_003710_020 Hb_047583_010 Hb_047583_010 Hb_001054_090--Hb_047583_010 Hb_001014_190 Hb_001014_190 Hb_001054_090--Hb_001014_190 Hb_080477_080 Hb_080477_080 Hb_001054_090--Hb_080477_080 Hb_000012_240 Hb_000012_240 Hb_000645_200--Hb_000012_240 Hb_000529_280 Hb_000529_280 Hb_000645_200--Hb_000529_280 Hb_093458_010 Hb_093458_010 Hb_000645_200--Hb_093458_010 Hb_001728_020 Hb_001728_020 Hb_000645_200--Hb_001728_020 Hb_002450_030 Hb_002450_030 Hb_000645_200--Hb_002450_030 Hb_027654_080 Hb_027654_080 Hb_000645_200--Hb_027654_080 Hb_002097_140 Hb_002097_140 Hb_005813_010--Hb_002097_140 Hb_007138_030 Hb_007138_030 Hb_005813_010--Hb_007138_030 Hb_000110_380 Hb_000110_380 Hb_005813_010--Hb_000110_380 Hb_122940_010 Hb_122940_010 Hb_005813_010--Hb_122940_010 Hb_005813_010--Hb_000567_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.531515 3.24877 2.56325 9.49001 0.130817 0.0960185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48826 3.57375 0.68876 3.94713 1.78815

CAGE analysis