Hb_002539_040

Information

Type -
Description -
Location Contig2539: 25634-29330
Sequence    

Annotation

kegg
ID rcu:RCOM_1620900
description SPFH domain-containing protein 2 precursor, putative
nr
ID XP_002512086.1
description SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
swissprot
ID Q1RMU4
description Erlin-2 OS=Bos taurus GN=ERLIN2 PE=2 SV=1
trembl
ID B9REE7
description SPFH domain-containing protein 2, putative OS=Ricinus communis GN=RCOM_1620900 PE=4 SV=1
Gene Ontology
ID GO:0005730
description spfh domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002539_040 0.0 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
2 Hb_005408_070 0.0893914307 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
3 Hb_000175_470 0.1157339201 - - lactoylglutathione lyase, putative [Ricinus communis]
4 Hb_001148_090 0.1418825818 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
5 Hb_000567_180 0.1469608317 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
6 Hb_000889_010 0.154663364 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
7 Hb_001148_100 0.166539145 - - -
8 Hb_000027_210 0.1681657937 - - Os01g0689300, partial [Oryza sativa Japonica Group]
9 Hb_001054_090 0.1729151572 - - Potassium channel SKOR, putative [Ricinus communis]
10 Hb_002781_050 0.1736305086 - - cytochrome B5 isoform 1, putative [Ricinus communis]
11 Hb_000116_560 0.174926476 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
12 Hb_002602_030 0.1751713577 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
13 Hb_177994_010 0.1787619821 - - PREDICTED: cullin-1 [Jatropha curcas]
14 Hb_002835_340 0.1813533782 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
15 Hb_000317_420 0.181838258 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
16 Hb_001014_190 0.1818923008 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
17 Hb_012807_130 0.1821451336 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
18 Hb_000110_380 0.1839090635 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
19 Hb_147245_010 0.1845532865 - - casein kinase, putative [Ricinus communis]
20 Hb_000216_050 0.1854683806 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002539_040 Hb_002539_040 Hb_005408_070 Hb_005408_070 Hb_002539_040--Hb_005408_070 Hb_000175_470 Hb_000175_470 Hb_002539_040--Hb_000175_470 Hb_001148_090 Hb_001148_090 Hb_002539_040--Hb_001148_090 Hb_000567_180 Hb_000567_180 Hb_002539_040--Hb_000567_180 Hb_000889_010 Hb_000889_010 Hb_002539_040--Hb_000889_010 Hb_001148_100 Hb_001148_100 Hb_002539_040--Hb_001148_100 Hb_005408_070--Hb_000567_180 Hb_005408_070--Hb_000175_470 Hb_001054_090 Hb_001054_090 Hb_005408_070--Hb_001054_090 Hb_000645_200 Hb_000645_200 Hb_005408_070--Hb_000645_200 Hb_005813_010 Hb_005813_010 Hb_005408_070--Hb_005813_010 Hb_000175_470--Hb_001148_100 Hb_143766_080 Hb_143766_080 Hb_000175_470--Hb_143766_080 Hb_172706_020 Hb_172706_020 Hb_000175_470--Hb_172706_020 Hb_000175_470--Hb_000567_180 Hb_002781_050 Hb_002781_050 Hb_001148_090--Hb_002781_050 Hb_000172_280 Hb_000172_280 Hb_001148_090--Hb_000172_280 Hb_001148_090--Hb_000889_010 Hb_004607_070 Hb_004607_070 Hb_001148_090--Hb_004607_070 Hb_001946_310 Hb_001946_310 Hb_001148_090--Hb_001946_310 Hb_001922_060 Hb_001922_060 Hb_000567_180--Hb_001922_060 Hb_000216_050 Hb_000216_050 Hb_000567_180--Hb_000216_050 Hb_026549_050 Hb_026549_050 Hb_000567_180--Hb_026549_050 Hb_009898_040 Hb_009898_040 Hb_000889_010--Hb_009898_040 Hb_004449_180 Hb_004449_180 Hb_000889_010--Hb_004449_180 Hb_000684_520 Hb_000684_520 Hb_000889_010--Hb_000684_520 Hb_001799_060 Hb_001799_060 Hb_000889_010--Hb_001799_060 Hb_168893_020 Hb_168893_020 Hb_000889_010--Hb_168893_020 Hb_001148_100--Hb_002781_050 Hb_000696_070 Hb_000696_070 Hb_001148_100--Hb_000696_070 Hb_002151_060 Hb_002151_060 Hb_001148_100--Hb_002151_060 Hb_158092_040 Hb_158092_040 Hb_001148_100--Hb_158092_040 Hb_001148_100--Hb_001148_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.17651 0.672446 0.653405 2.31318 0.0363352 0.114524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372563 0.976869 0.121044 1.23958 0.673254

CAGE analysis