Hb_000172_280

Information

Type -
Description -
Location Contig172: 317941-323139
Sequence    

Annotation

kegg
ID rcu:RCOM_0984440
description aspartate aminotransferase, putative (EC:2.6.1.1)
nr
ID XP_002528972.1
description aspartate aminotransferase, putative [Ricinus communis]
swissprot
ID E9L7A5
description Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase OS=Petunia hybrida PE=1 SV=1
trembl
ID B9SSK3
description Aspartate aminotransferase, putative OS=Ricinus communis GN=RCOM_0984440 PE=3 SV=1
Gene Ontology
ID GO:0009570
description bifunctional aspartate aminotransferase and glutamate aspartate-prephenate aminotransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16140: 317852-322904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_280 0.0 - - aspartate aminotransferase, putative [Ricinus communis]
2 Hb_000220_110 0.1007398073 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
3 Hb_002486_080 0.1095569185 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
4 Hb_124315_010 0.1176987062 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
5 Hb_000465_150 0.1213934138 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
6 Hb_000907_150 0.1216523533 - - hypothetical protein L484_004295 [Morus notabilis]
7 Hb_001148_090 0.1246373486 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
8 Hb_000683_050 0.1266609723 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
9 Hb_001616_070 0.1283518151 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
10 Hb_027380_190 0.1322698913 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
11 Hb_000310_120 0.133707405 - - PREDICTED: probable transaldolase [Jatropha curcas]
12 Hb_007416_070 0.1372413257 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
13 Hb_007229_050 0.1381946493 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
14 Hb_002627_020 0.1393968744 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
15 Hb_009078_030 0.1407778194 - - hypothetical protein PRUPE_ppa016992mg, partial [Prunus persica]
16 Hb_005015_110 0.1409316005 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
17 Hb_008749_020 0.1434476167 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007416_110 0.143484744 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
19 Hb_010390_010 0.1468477785 - - casein kinase, putative [Ricinus communis]
20 Hb_000197_190 0.1470168099 - - PREDICTED: diaminopimelate decarboxylase 2, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000172_280 Hb_000172_280 Hb_000220_110 Hb_000220_110 Hb_000172_280--Hb_000220_110 Hb_002486_080 Hb_002486_080 Hb_000172_280--Hb_002486_080 Hb_124315_010 Hb_124315_010 Hb_000172_280--Hb_124315_010 Hb_000465_150 Hb_000465_150 Hb_000172_280--Hb_000465_150 Hb_000907_150 Hb_000907_150 Hb_000172_280--Hb_000907_150 Hb_001148_090 Hb_001148_090 Hb_000172_280--Hb_001148_090 Hb_001616_070 Hb_001616_070 Hb_000220_110--Hb_001616_070 Hb_003227_010 Hb_003227_010 Hb_000220_110--Hb_003227_010 Hb_000139_140 Hb_000139_140 Hb_000220_110--Hb_000139_140 Hb_000683_050 Hb_000683_050 Hb_000220_110--Hb_000683_050 Hb_003683_130 Hb_003683_130 Hb_000220_110--Hb_003683_130 Hb_001301_280 Hb_001301_280 Hb_002486_080--Hb_001301_280 Hb_001951_060 Hb_001951_060 Hb_002486_080--Hb_001951_060 Hb_007416_070 Hb_007416_070 Hb_002486_080--Hb_007416_070 Hb_002486_080--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_002486_080--Hb_002281_020 Hb_001571_060 Hb_001571_060 Hb_002486_080--Hb_001571_060 Hb_007229_050 Hb_007229_050 Hb_124315_010--Hb_007229_050 Hb_006185_030 Hb_006185_030 Hb_124315_010--Hb_006185_030 Hb_004883_020 Hb_004883_020 Hb_124315_010--Hb_004883_020 Hb_124315_010--Hb_000683_050 Hb_000861_100 Hb_000861_100 Hb_124315_010--Hb_000861_100 Hb_007416_110 Hb_007416_110 Hb_000465_150--Hb_007416_110 Hb_005015_110 Hb_005015_110 Hb_000465_150--Hb_005015_110 Hb_003025_030 Hb_003025_030 Hb_000465_150--Hb_003025_030 Hb_002232_430 Hb_002232_430 Hb_000465_150--Hb_002232_430 Hb_001493_150 Hb_001493_150 Hb_000465_150--Hb_001493_150 Hb_000907_150--Hb_000220_110 Hb_008749_020 Hb_008749_020 Hb_000907_150--Hb_008749_020 Hb_000907_150--Hb_000465_150 Hb_000907_150--Hb_003227_010 Hb_000907_150--Hb_001616_070 Hb_002781_050 Hb_002781_050 Hb_001148_090--Hb_002781_050 Hb_000889_010 Hb_000889_010 Hb_001148_090--Hb_000889_010 Hb_004607_070 Hb_004607_070 Hb_001148_090--Hb_004607_070 Hb_001946_310 Hb_001946_310 Hb_001148_090--Hb_001946_310 Hb_002539_040 Hb_002539_040 Hb_001148_090--Hb_002539_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.42952 15.5009 38.8251 51.9782 4.53273 4.15366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.0867 14.6408 9.75976 60.6871 33.7276

CAGE analysis