Hb_124315_010

Information

Type -
Description -
Location Contig124315: 5548-7743
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04740g
description POPTRDRAFT_913858; hypothetical protein
nr
ID XP_012092701.1
description PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
swissprot
ID P0AAD5
description Tyrosine-specific transport protein OS=Shigella flexneri GN=tyrP PE=3 SV=1
trembl
ID B9IPM2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s04740g PE=4 SV=1
Gene Ontology
ID GO:0001708
description tyrosine-specific transport

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124315_010 0.0 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
2 Hb_007229_050 0.1080477177 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
3 Hb_006185_030 0.1086560322 - - threonine synthase, putative [Ricinus communis]
4 Hb_000172_280 0.1176987062 - - aspartate aminotransferase, putative [Ricinus communis]
5 Hb_004883_020 0.1192080247 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
6 Hb_000683_050 0.120645474 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
7 Hb_000861_100 0.1217833895 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
8 Hb_002281_020 0.1254542822 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
9 Hb_001754_050 0.1283469842 - - protein arginine n-methyltransferase, putative [Ricinus communis]
10 Hb_003025_030 0.1293085205 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_002486_080 0.1304431017 - - PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase isoform X1 [Jatropha curcas]
12 Hb_007416_110 0.1333608938 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
13 Hb_001040_150 0.1350865343 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001623_190 0.1352930678 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
15 Hb_000465_150 0.1353313647 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
16 Hb_003226_090 0.1358435188 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
17 Hb_000310_120 0.1367395791 - - PREDICTED: probable transaldolase [Jatropha curcas]
18 Hb_000804_020 0.1369659103 - - PREDICTED: aconitate hydratase, cytoplasmic [Jatropha curcas]
19 Hb_004129_010 0.1370209667 - - aspartate aminotransferase, putative [Ricinus communis]
20 Hb_000622_060 0.1372950206 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_124315_010 Hb_124315_010 Hb_007229_050 Hb_007229_050 Hb_124315_010--Hb_007229_050 Hb_006185_030 Hb_006185_030 Hb_124315_010--Hb_006185_030 Hb_000172_280 Hb_000172_280 Hb_124315_010--Hb_000172_280 Hb_004883_020 Hb_004883_020 Hb_124315_010--Hb_004883_020 Hb_000683_050 Hb_000683_050 Hb_124315_010--Hb_000683_050 Hb_000861_100 Hb_000861_100 Hb_124315_010--Hb_000861_100 Hb_007229_050--Hb_006185_030 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_001235_130 Hb_001235_130 Hb_007229_050--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_007229_050--Hb_098533_010 Hb_000157_140 Hb_000157_140 Hb_007229_050--Hb_000157_140 Hb_000256_160 Hb_000256_160 Hb_007229_050--Hb_000256_160 Hb_009803_020 Hb_009803_020 Hb_006185_030--Hb_009803_020 Hb_001040_150 Hb_001040_150 Hb_006185_030--Hb_001040_150 Hb_006185_030--Hb_001235_130 Hb_006185_030--Hb_098533_010 Hb_011174_080 Hb_011174_080 Hb_006185_030--Hb_011174_080 Hb_000220_110 Hb_000220_110 Hb_000172_280--Hb_000220_110 Hb_002486_080 Hb_002486_080 Hb_000172_280--Hb_002486_080 Hb_000465_150 Hb_000465_150 Hb_000172_280--Hb_000465_150 Hb_000907_150 Hb_000907_150 Hb_000172_280--Hb_000907_150 Hb_001148_090 Hb_001148_090 Hb_000172_280--Hb_001148_090 Hb_007575_030 Hb_007575_030 Hb_004883_020--Hb_007575_030 Hb_001754_050 Hb_001754_050 Hb_004883_020--Hb_001754_050 Hb_000309_030 Hb_000309_030 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180 Hb_007416_070 Hb_007416_070 Hb_000683_050--Hb_007416_070 Hb_000494_030 Hb_000494_030 Hb_000683_050--Hb_000494_030 Hb_004030_060 Hb_004030_060 Hb_000683_050--Hb_004030_060 Hb_001811_170 Hb_001811_170 Hb_000683_050--Hb_001811_170 Hb_010390_010 Hb_010390_010 Hb_000683_050--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_000683_050--Hb_005854_040 Hb_000057_130 Hb_000057_130 Hb_000861_100--Hb_000057_130 Hb_000861_100--Hb_007229_050 Hb_003371_070 Hb_003371_070 Hb_000861_100--Hb_003371_070 Hb_007537_030 Hb_007537_030 Hb_000861_100--Hb_007537_030 Hb_005305_120 Hb_005305_120 Hb_000861_100--Hb_005305_120 Hb_000861_100--Hb_004129_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305413 0.674892 1.33766 1.49933 0.0246005 0.238112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.363314 0.351807 0.373104 1.63919 1.33911

CAGE analysis