Hb_007575_030

Information

Type -
Description -
Location Contig7575: 50817-66515
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02810g
description POPTRDRAFT_816029; regulator of chromosome condensation family protein
nr
ID XP_012073847.1
description PREDICTED: protein RCC2 homolog [Jatropha curcas]
swissprot
ID Q52KW8
description Protein RCC2 homolog OS=Xenopus laevis GN=rcc2 PE=2 SV=1
trembl
ID A0A067KL27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08247 PE=4 SV=1
Gene Ontology
ID GO:0000278
description protein rcc2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57082: 50803-66329 , PASA_asmbl_57083: 51597-52049 , PASA_asmbl_57085: 51123-62665
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007575_030 0.0 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
2 Hb_004883_020 0.0813919649 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
3 Hb_000261_310 0.1001376733 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
4 Hb_000165_070 0.100536888 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
5 Hb_000116_240 0.1048171992 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
6 Hb_000318_170 0.1051280309 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
7 Hb_000042_380 0.1077363928 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
8 Hb_001277_400 0.1096723551 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
9 Hb_000438_010 0.1102987248 - - -
10 Hb_000024_130 0.1111604712 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000803_120 0.1127366007 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
12 Hb_001754_050 0.1138323736 - - protein arginine n-methyltransferase, putative [Ricinus communis]
13 Hb_000309_030 0.116231266 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
14 Hb_004096_220 0.1180899057 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
15 Hb_005485_070 0.1209325651 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
16 Hb_000731_210 0.1215306846 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003226_090 0.1239868852 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
18 Hb_000737_010 0.1241040197 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
19 Hb_000094_150 0.1270698544 - - -
20 Hb_000256_160 0.1290862554 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 3-like isoform X1 [Glycine max]

Gene co-expression network

sample Hb_007575_030 Hb_007575_030 Hb_004883_020 Hb_004883_020 Hb_007575_030--Hb_004883_020 Hb_000261_310 Hb_000261_310 Hb_007575_030--Hb_000261_310 Hb_000165_070 Hb_000165_070 Hb_007575_030--Hb_000165_070 Hb_000116_240 Hb_000116_240 Hb_007575_030--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_007575_030--Hb_000318_170 Hb_000042_380 Hb_000042_380 Hb_007575_030--Hb_000042_380 Hb_001754_050 Hb_001754_050 Hb_004883_020--Hb_001754_050 Hb_000309_030 Hb_000309_030 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_004297_090 Hb_004297_090 Hb_004883_020--Hb_004297_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180 Hb_000256_160 Hb_000256_160 Hb_000261_310--Hb_000256_160 Hb_000261_310--Hb_000309_030 Hb_000094_150 Hb_000094_150 Hb_000261_310--Hb_000094_150 Hb_000261_310--Hb_000116_240 Hb_004096_220 Hb_004096_220 Hb_000261_310--Hb_004096_220 Hb_001240_050 Hb_001240_050 Hb_000165_070--Hb_001240_050 Hb_000760_080 Hb_000760_080 Hb_000165_070--Hb_000760_080 Hb_000737_010 Hb_000737_010 Hb_000165_070--Hb_000737_010 Hb_000165_070--Hb_004096_220 Hb_000438_010 Hb_000438_010 Hb_000165_070--Hb_000438_010 Hb_005485_070 Hb_005485_070 Hb_000116_240--Hb_005485_070 Hb_000116_240--Hb_000309_030 Hb_000590_070 Hb_000590_070 Hb_000116_240--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_000116_240--Hb_001277_400 Hb_000116_240--Hb_000318_170 Hb_000318_170--Hb_005485_070 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000318_170--Hb_000309_030 Hb_000731_210 Hb_000731_210 Hb_000318_170--Hb_000731_210 Hb_008695_150 Hb_008695_150 Hb_000042_380--Hb_008695_150 Hb_005545_020 Hb_005545_020 Hb_000042_380--Hb_005545_020 Hb_000042_380--Hb_001277_400 Hb_005568_050 Hb_005568_050 Hb_000042_380--Hb_005568_050 Hb_000042_380--Hb_004883_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.948201 8.33304 16.8447 12.5093 1.181 1.68641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33373 1.73626 0.939016 14.6824 9.61808

CAGE analysis