Hb_001240_050

Information

Type -
Description -
Location Contig1240: 110855-127492
Sequence    

Annotation

kegg
ID rcu:RCOM_0868300
description Extensin-3 precursor, putative
nr
ID XP_012066469.1
description PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
swissprot
ID Q9FVQ5
description CSC1-like protein At1g32090 OS=Arabidopsis thaliana GN=At1g32090 PE=1 SV=1
trembl
ID A0A067LQ48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12198 PE=4 SV=1
Gene Ontology
ID GO:0005794
description csc1-like protein at1g32090

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07299: 110892-112938 , PASA_asmbl_07300: 110974-111422 , PASA_asmbl_07301: 112637-127172 , PASA_asmbl_07302: 123433-124892
cDNA
(Sanger)
(ID:Location)		 027_K12.ab1: 110892-112907 , 052_M03.ab1: 110892-112874

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001240_050 0.0 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
2 Hb_000165_070 0.1062929935 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
3 Hb_000012_320 0.1228562753 - - PREDICTED: uncharacterized protein LOC105638164 [Jatropha curcas]
4 Hb_001048_100 0.1405273955 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
5 Hb_003659_010 0.1416935116 - - aldo/keto reductase AKR [Manihot esculenta]
6 Hb_005545_020 0.1424835375 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
7 Hb_001117_080 0.1425571645 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
8 Hb_007575_030 0.1433596017 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
9 Hb_000088_240 0.1452980491 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
10 Hb_000760_080 0.1479076944 - - mutt domain protein, putative [Ricinus communis]
11 Hb_002432_050 0.1486088809 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
12 Hb_012366_050 0.1525224228 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
13 Hb_086639_050 0.1530149968 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
14 Hb_004883_020 0.1544871112 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
15 Hb_005527_060 0.1592645801 - - malic enzyme, putative [Ricinus communis]
16 Hb_000529_040 0.1602413894 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
17 Hb_005568_050 0.1621551857 - - ascorbate peroxidase [Hevea brasiliensis]
18 Hb_000567_090 0.1629538051 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
19 Hb_002095_050 0.1631575178 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
20 Hb_003226_090 0.1640737439 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001240_050 Hb_001240_050 Hb_000165_070 Hb_000165_070 Hb_001240_050--Hb_000165_070 Hb_000012_320 Hb_000012_320 Hb_001240_050--Hb_000012_320 Hb_001048_100 Hb_001048_100 Hb_001240_050--Hb_001048_100 Hb_003659_010 Hb_003659_010 Hb_001240_050--Hb_003659_010 Hb_005545_020 Hb_005545_020 Hb_001240_050--Hb_005545_020 Hb_001117_080 Hb_001117_080 Hb_001240_050--Hb_001117_080 Hb_007575_030 Hb_007575_030 Hb_000165_070--Hb_007575_030 Hb_000760_080 Hb_000760_080 Hb_000165_070--Hb_000760_080 Hb_000737_010 Hb_000737_010 Hb_000165_070--Hb_000737_010 Hb_004096_220 Hb_004096_220 Hb_000165_070--Hb_004096_220 Hb_000438_010 Hb_000438_010 Hb_000165_070--Hb_000438_010 Hb_002942_140 Hb_002942_140 Hb_000012_320--Hb_002942_140 Hb_004545_080 Hb_004545_080 Hb_000012_320--Hb_004545_080 Hb_000012_320--Hb_001117_080 Hb_002432_050 Hb_002432_050 Hb_000012_320--Hb_002432_050 Hb_000012_320--Hb_001048_100 Hb_031385_010 Hb_031385_010 Hb_001048_100--Hb_031385_010 Hb_001048_100--Hb_000760_080 Hb_000731_210 Hb_000731_210 Hb_001048_100--Hb_000731_210 Hb_002301_370 Hb_002301_370 Hb_001048_100--Hb_002301_370 Hb_000230_360 Hb_000230_360 Hb_001048_100--Hb_000230_360 Hb_000061_310 Hb_000061_310 Hb_001048_100--Hb_000061_310 Hb_001195_220 Hb_001195_220 Hb_003659_010--Hb_001195_220 Hb_007576_140 Hb_007576_140 Hb_003659_010--Hb_007576_140 Hb_002701_160 Hb_002701_160 Hb_003659_010--Hb_002701_160 Hb_000679_110 Hb_000679_110 Hb_003659_010--Hb_000679_110 Hb_002235_050 Hb_002235_050 Hb_003659_010--Hb_002235_050 Hb_003299_020 Hb_003299_020 Hb_005545_020--Hb_003299_020 Hb_000042_380 Hb_000042_380 Hb_005545_020--Hb_000042_380 Hb_000753_110 Hb_000753_110 Hb_005545_020--Hb_000753_110 Hb_001754_050 Hb_001754_050 Hb_005545_020--Hb_001754_050 Hb_004883_020 Hb_004883_020 Hb_005545_020--Hb_004883_020 Hb_005545_020--Hb_007575_030 Hb_000098_180 Hb_000098_180 Hb_001117_080--Hb_000098_180 Hb_086639_050 Hb_086639_050 Hb_001117_080--Hb_086639_050 Hb_001117_080--Hb_002432_050 Hb_000649_330 Hb_000649_330 Hb_001117_080--Hb_000649_330 Hb_000567_090 Hb_000567_090 Hb_001117_080--Hb_000567_090 Hb_002249_170 Hb_002249_170 Hb_001117_080--Hb_002249_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.950696 3.87538 12.0974 4.3454 0.187036 0.523039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.748456 0.283163 0.953455 6.94945 4.30217

CAGE analysis