Hb_007576_140

Information

Type rubber biosynthesis
Description Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Location Contig7576: 139072-144747
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23930g
description hypothetical protein
nr
ID BAF98291.1
description 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
swissprot
ID P69834
description 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ISPD PE=1 SV=1
trembl
ID A9ZN09
description 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase OS=Hevea brasiliensis GN=HbCMS PE=2 SV=1
Gene Ontology
ID GO:0016779
description 2-c-methyl-d-erythritol 4-phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007576_140 0.0 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
2 Hb_001195_220 0.1134378859 - - sugar transporter, putative [Ricinus communis]
3 Hb_003659_010 0.1173459716 - - aldo/keto reductase AKR [Manihot esculenta]
4 Hb_007123_080 0.1359542307 - - big map kinase/bmk, putative [Ricinus communis]
5 Hb_000679_110 0.136180747 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
6 Hb_025787_010 0.1365835007 - - PREDICTED: histone H1.2-like [Jatropha curcas]
7 Hb_000567_090 0.1379073813 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
8 Hb_002913_010 0.1383128444 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
9 Hb_002235_050 0.1416788671 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
10 Hb_080147_020 0.1450432607 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
11 Hb_017193_010 0.147860209 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
12 Hb_000098_150 0.1500232544 - - DNA helicase hus2, putative [Ricinus communis]
13 Hb_004108_210 0.1502966964 - - phenazine biosynthesis protein, putative [Ricinus communis]
14 Hb_000296_010 0.153570318 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
15 Hb_005903_020 0.159602416 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
16 Hb_001221_580 0.1602116531 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
17 Hb_000161_240 0.1621247854 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
18 Hb_000529_040 0.1653825456 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
19 Hb_000678_010 0.165972338 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
20 Hb_001240_050 0.1710814009 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]

Gene co-expression network

sample Hb_007576_140 Hb_007576_140 Hb_001195_220 Hb_001195_220 Hb_007576_140--Hb_001195_220 Hb_003659_010 Hb_003659_010 Hb_007576_140--Hb_003659_010 Hb_007123_080 Hb_007123_080 Hb_007576_140--Hb_007123_080 Hb_000679_110 Hb_000679_110 Hb_007576_140--Hb_000679_110 Hb_025787_010 Hb_025787_010 Hb_007576_140--Hb_025787_010 Hb_000567_090 Hb_000567_090 Hb_007576_140--Hb_000567_090 Hb_001195_220--Hb_000679_110 Hb_001195_220--Hb_003659_010 Hb_001221_580 Hb_001221_580 Hb_001195_220--Hb_001221_580 Hb_001195_220--Hb_000567_090 Hb_129204_020 Hb_129204_020 Hb_001195_220--Hb_129204_020 Hb_002701_160 Hb_002701_160 Hb_003659_010--Hb_002701_160 Hb_001240_050 Hb_001240_050 Hb_003659_010--Hb_001240_050 Hb_003659_010--Hb_000679_110 Hb_002235_050 Hb_002235_050 Hb_003659_010--Hb_002235_050 Hb_002540_070 Hb_002540_070 Hb_007123_080--Hb_002540_070 Hb_005527_060 Hb_005527_060 Hb_007123_080--Hb_005527_060 Hb_004517_030 Hb_004517_030 Hb_007123_080--Hb_004517_030 Hb_002942_120 Hb_002942_120 Hb_007123_080--Hb_002942_120 Hb_000032_200 Hb_000032_200 Hb_007123_080--Hb_000032_200 Hb_000679_110--Hb_002235_050 Hb_010872_050 Hb_010872_050 Hb_000679_110--Hb_010872_050 Hb_000679_110--Hb_129204_020 Hb_004117_270 Hb_004117_270 Hb_025787_010--Hb_004117_270 Hb_104920_010 Hb_104920_010 Hb_025787_010--Hb_104920_010 Hb_012799_150 Hb_012799_150 Hb_025787_010--Hb_012799_150 Hb_003417_030 Hb_003417_030 Hb_025787_010--Hb_003417_030 Hb_000161_240 Hb_000161_240 Hb_025787_010--Hb_000161_240 Hb_054865_050 Hb_054865_050 Hb_025787_010--Hb_054865_050 Hb_080147_020 Hb_080147_020 Hb_000567_090--Hb_080147_020 Hb_052135_020 Hb_052135_020 Hb_000567_090--Hb_052135_020 Hb_086639_050 Hb_086639_050 Hb_000567_090--Hb_086639_050 Hb_000567_090--Hb_001221_580 Hb_000098_180 Hb_000098_180 Hb_000567_090--Hb_000098_180 Hb_001117_080 Hb_001117_080 Hb_000567_090--Hb_001117_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01927 7.26013 22.5554 4.65928 1.31915 1.87714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85771 3.51437 1.70862 12.6434 5.44051

CAGE analysis