Hb_003659_010

Information

Type -
Description -
Location Contig3659: 14033-18056
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14490g
description POPTRDRAFT_246410; aldo/keto reductase family protein
nr
ID AAX84672.1
description aldo/keto reductase AKR [Manihot esculenta]
swissprot
ID Q7XT99
description Probable aldo-keto reductase 2 OS=Oryza sativa subsp. japonica GN=Os04g0338000 PE=2 SV=2
trembl
ID Q52QX9
description Aldo/keto reductase AKR OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0050236
description probable aldo-keto reductase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37663: 14621-15098 , PASA_asmbl_37664: 14054-18048 , PASA_asmbl_37665: 15329-16223 , PASA_asmbl_37666: 14072-17526 , PASA_asmbl_37667: 15141-15248
cDNA
(Sanger)
(ID:Location)		 029_A05.ab1: 14076-14566 , 033_G18.ab1: 14054-16437 , 037_L08.ab1: 17805-18023 , 038_M13.ab1: 14054-17574 , 043_O18.ab1: 14056-16407 , 050_D02.ab1: 14094-14612

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003659_010 0.0 - - aldo/keto reductase AKR [Manihot esculenta]
2 Hb_001195_220 0.1158750962 - - sugar transporter, putative [Ricinus communis]
3 Hb_007576_140 0.1173459716 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
4 Hb_002701_160 0.1372485269 - - PREDICTED: UDP-arabinopyranose mutase 1 [Jatropha curcas]
5 Hb_001240_050 0.1416935116 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
6 Hb_000679_110 0.1454639585 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
7 Hb_002235_050 0.1454834615 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
8 Hb_005545_020 0.1500106814 - - endo beta n-acetylglucosaminidase, putative [Ricinus communis]
9 Hb_004883_020 0.1584912173 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
10 Hb_000165_070 0.1588859276 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
11 Hb_025787_010 0.1620979965 - - PREDICTED: histone H1.2-like [Jatropha curcas]
12 Hb_003025_030 0.1631497651 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
13 Hb_130498_010 0.163496412 - - Laccase 17 [Theobroma cacao]
14 Hb_007575_030 0.163844473 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
15 Hb_000567_090 0.1685815393 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
16 Hb_003529_040 0.1695622111 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
17 Hb_000042_380 0.1715775024 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
18 Hb_000230_530 0.1739402214 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000529_040 0.1745425763 - - PREDICTED: uncharacterized protein LOC105641671 [Jatropha curcas]
20 Hb_005903_020 0.1777928221 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_003659_010 Hb_003659_010 Hb_001195_220 Hb_001195_220 Hb_003659_010--Hb_001195_220 Hb_007576_140 Hb_007576_140 Hb_003659_010--Hb_007576_140 Hb_002701_160 Hb_002701_160 Hb_003659_010--Hb_002701_160 Hb_001240_050 Hb_001240_050 Hb_003659_010--Hb_001240_050 Hb_000679_110 Hb_000679_110 Hb_003659_010--Hb_000679_110 Hb_002235_050 Hb_002235_050 Hb_003659_010--Hb_002235_050 Hb_001195_220--Hb_000679_110 Hb_001195_220--Hb_007576_140 Hb_001221_580 Hb_001221_580 Hb_001195_220--Hb_001221_580 Hb_000567_090 Hb_000567_090 Hb_001195_220--Hb_000567_090 Hb_129204_020 Hb_129204_020 Hb_001195_220--Hb_129204_020 Hb_007123_080 Hb_007123_080 Hb_007576_140--Hb_007123_080 Hb_007576_140--Hb_000679_110 Hb_025787_010 Hb_025787_010 Hb_007576_140--Hb_025787_010 Hb_007576_140--Hb_000567_090 Hb_005545_020 Hb_005545_020 Hb_002701_160--Hb_005545_020 Hb_130498_010 Hb_130498_010 Hb_002701_160--Hb_130498_010 Hb_001300_170 Hb_001300_170 Hb_002701_160--Hb_001300_170 Hb_013726_010 Hb_013726_010 Hb_002701_160--Hb_013726_010 Hb_003299_020 Hb_003299_020 Hb_002701_160--Hb_003299_020 Hb_000165_070 Hb_000165_070 Hb_001240_050--Hb_000165_070 Hb_000012_320 Hb_000012_320 Hb_001240_050--Hb_000012_320 Hb_001048_100 Hb_001048_100 Hb_001240_050--Hb_001048_100 Hb_001240_050--Hb_005545_020 Hb_001117_080 Hb_001117_080 Hb_001240_050--Hb_001117_080 Hb_000679_110--Hb_002235_050 Hb_010872_050 Hb_010872_050 Hb_000679_110--Hb_010872_050 Hb_000679_110--Hb_129204_020 Hb_002913_010 Hb_002913_010 Hb_002235_050--Hb_002913_010 Hb_177321_040 Hb_177321_040 Hb_002235_050--Hb_177321_040 Hb_002235_050--Hb_010872_050 Hb_007185_040 Hb_007185_040 Hb_002235_050--Hb_007185_040 Hb_000678_010 Hb_000678_010 Hb_002235_050--Hb_000678_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8521 135.798 468.294 146.415 17.9196 19.1388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.2959 71.9095 64.5785 373.513 162.594

CAGE analysis