Hb_002913_010

Information

Type -
Description -
Location Contig2913: 20051-24664
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15370g
description POPTRDRAFT_646882; hypothetical protein
nr
ID XP_012065982.1
description PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
swissprot
ID Q922Q1
description Mitochondrial amidoxime reducing component 2 OS=Mus musculus GN=Marc2 PE=1 SV=1
trembl
ID A0A067L3Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26680 PE=4 SV=1
Gene Ontology
ID GO:0003824
description mitochondrial amidoxime reducing component 2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30536: 20011-24583 , PASA_asmbl_30540: 23655-24105
cDNA
(Sanger)
(ID:Location)		 035_D22.ab1: 21520-24583 , 040_B14.ab1: 21519-24512

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002913_010 0.0 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
2 Hb_000678_010 0.0820677317 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
3 Hb_000229_050 0.10822287 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
4 Hb_002235_050 0.1124296706 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
5 Hb_000296_010 0.1285700819 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
6 Hb_000742_010 0.1310172501 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_133004_010 0.1312672094 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
8 Hb_029388_010 0.1325653339 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
9 Hb_004108_210 0.1326064594 - - phenazine biosynthesis protein, putative [Ricinus communis]
10 Hb_005903_020 0.1342848047 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
11 Hb_011716_010 0.1349879727 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
12 Hb_000830_020 0.1359420443 - - PREDICTED: 7-methylguanosine phosphate-specific 5'-nucleotidase A isoform X2 [Jatropha curcas]
13 Hb_007185_040 0.1367285484 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
14 Hb_000579_080 0.1374513598 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
15 Hb_005214_170 0.1375641833 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
16 Hb_001946_220 0.1375806166 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
17 Hb_007576_140 0.1383128444 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
18 Hb_005946_150 0.1389794552 - - PREDICTED: DNA mismatch repair protein MSH7 [Jatropha curcas]
19 Hb_000098_150 0.139452147 - - DNA helicase hus2, putative [Ricinus communis]
20 Hb_000926_060 0.1416294813 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002913_010 Hb_002913_010 Hb_000678_010 Hb_000678_010 Hb_002913_010--Hb_000678_010 Hb_000229_050 Hb_000229_050 Hb_002913_010--Hb_000229_050 Hb_002235_050 Hb_002235_050 Hb_002913_010--Hb_002235_050 Hb_000296_010 Hb_000296_010 Hb_002913_010--Hb_000296_010 Hb_000742_010 Hb_000742_010 Hb_002913_010--Hb_000742_010 Hb_133004_010 Hb_133004_010 Hb_002913_010--Hb_133004_010 Hb_005903_020 Hb_005903_020 Hb_000678_010--Hb_005903_020 Hb_000678_010--Hb_000229_050 Hb_000926_060 Hb_000926_060 Hb_000678_010--Hb_000926_060 Hb_011716_010 Hb_011716_010 Hb_000678_010--Hb_011716_010 Hb_000830_020 Hb_000830_020 Hb_000678_010--Hb_000830_020 Hb_008206_080 Hb_008206_080 Hb_000229_050--Hb_008206_080 Hb_000579_080 Hb_000579_080 Hb_000229_050--Hb_000579_080 Hb_012633_050 Hb_012633_050 Hb_000229_050--Hb_012633_050 Hb_000229_050--Hb_011716_010 Hb_000739_240 Hb_000739_240 Hb_000229_050--Hb_000739_240 Hb_000101_390 Hb_000101_390 Hb_000229_050--Hb_000101_390 Hb_000679_110 Hb_000679_110 Hb_002235_050--Hb_000679_110 Hb_177321_040 Hb_177321_040 Hb_002235_050--Hb_177321_040 Hb_010872_050 Hb_010872_050 Hb_002235_050--Hb_010872_050 Hb_007185_040 Hb_007185_040 Hb_002235_050--Hb_007185_040 Hb_002235_050--Hb_000678_010 Hb_004108_210 Hb_004108_210 Hb_000296_010--Hb_004108_210 Hb_000098_150 Hb_000098_150 Hb_000296_010--Hb_000098_150 Hb_000098_030 Hb_000098_030 Hb_000296_010--Hb_000098_030 Hb_005144_210 Hb_005144_210 Hb_000296_010--Hb_005144_210 Hb_000940_050 Hb_000940_050 Hb_000296_010--Hb_000940_050 Hb_000076_210 Hb_000076_210 Hb_000742_010--Hb_000076_210 Hb_000174_260 Hb_000174_260 Hb_000742_010--Hb_000174_260 Hb_001633_090 Hb_001633_090 Hb_000742_010--Hb_001633_090 Hb_000913_030 Hb_000913_030 Hb_000742_010--Hb_000913_030 Hb_006824_010 Hb_006824_010 Hb_000742_010--Hb_006824_010 Hb_005754_040 Hb_005754_040 Hb_000742_010--Hb_005754_040 Hb_133004_010--Hb_000830_020 Hb_001482_050 Hb_001482_050 Hb_133004_010--Hb_001482_050 Hb_001660_100 Hb_001660_100 Hb_133004_010--Hb_001660_100 Hb_006570_160 Hb_006570_160 Hb_133004_010--Hb_006570_160 Hb_001227_120 Hb_001227_120 Hb_133004_010--Hb_001227_120 Hb_133004_010--Hb_005754_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.525 15.6487 65.4979 25.5019 8.51471 11.8836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9332 16.6004 9.26682 46.8422 17.6809

CAGE analysis