Hb_000679_110

Information

Type -
Description -
Location Contig679: 81756-88909
Sequence    

Annotation

kegg
ID tcc:TCM_037017
description Kinase family protein / peptidoglycan-binding LysM domain-containing protein
nr
ID XP_012076591.1
description PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
swissprot
ID F4IB81
description LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3 PE=2 SV=1
trembl
ID A0A067KMU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07176 PE=3 SV=1
Gene Ontology
ID GO:0004674
description lysm domain receptor-like kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53684: 81850-82705 , PASA_asmbl_53685: 83198-83536 , PASA_asmbl_53686: 83710-85217 , PASA_asmbl_53687: 85946-86717 , PASA_asmbl_53688: 86048-87866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000679_110 0.0 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
2 Hb_001195_220 0.1048589655 - - sugar transporter, putative [Ricinus communis]
3 Hb_002235_050 0.1156795642 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
4 Hb_010872_050 0.1260336477 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
5 Hb_007576_140 0.136180747 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
6 Hb_129204_020 0.1438634252 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
7 Hb_003659_010 0.1454639585 - - aldo/keto reductase AKR [Manihot esculenta]
8 Hb_016734_020 0.1465467024 - - sugar transporter, putative [Ricinus communis]
9 Hb_000406_090 0.1472983357 - - unknown [Populus trichocarpa]
10 Hb_000296_010 0.1482540253 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
11 Hb_158445_020 0.1493113994 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000567_090 0.149645936 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
13 Hb_001221_580 0.1500249909 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
14 Hb_000678_010 0.1514841649 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
15 Hb_000258_090 0.1523883719 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
16 Hb_007185_040 0.1529249213 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
17 Hb_000229_050 0.1549074623 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
18 Hb_002913_010 0.1550666015 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
19 Hb_004108_210 0.1569215953 - - phenazine biosynthesis protein, putative [Ricinus communis]
20 Hb_008053_060 0.1576231302 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000679_110 Hb_000679_110 Hb_001195_220 Hb_001195_220 Hb_000679_110--Hb_001195_220 Hb_002235_050 Hb_002235_050 Hb_000679_110--Hb_002235_050 Hb_010872_050 Hb_010872_050 Hb_000679_110--Hb_010872_050 Hb_007576_140 Hb_007576_140 Hb_000679_110--Hb_007576_140 Hb_129204_020 Hb_129204_020 Hb_000679_110--Hb_129204_020 Hb_003659_010 Hb_003659_010 Hb_000679_110--Hb_003659_010 Hb_001195_220--Hb_007576_140 Hb_001195_220--Hb_003659_010 Hb_001221_580 Hb_001221_580 Hb_001195_220--Hb_001221_580 Hb_000567_090 Hb_000567_090 Hb_001195_220--Hb_000567_090 Hb_001195_220--Hb_129204_020 Hb_002913_010 Hb_002913_010 Hb_002235_050--Hb_002913_010 Hb_177321_040 Hb_177321_040 Hb_002235_050--Hb_177321_040 Hb_002235_050--Hb_010872_050 Hb_007185_040 Hb_007185_040 Hb_002235_050--Hb_007185_040 Hb_000678_010 Hb_000678_010 Hb_002235_050--Hb_000678_010 Hb_016734_020 Hb_016734_020 Hb_010872_050--Hb_016734_020 Hb_010872_050--Hb_007185_040 Hb_011674_040 Hb_011674_040 Hb_010872_050--Hb_011674_040 Hb_006916_110 Hb_006916_110 Hb_010872_050--Hb_006916_110 Hb_000979_220 Hb_000979_220 Hb_010872_050--Hb_000979_220 Hb_000345_320 Hb_000345_320 Hb_010872_050--Hb_000345_320 Hb_007576_140--Hb_003659_010 Hb_007123_080 Hb_007123_080 Hb_007576_140--Hb_007123_080 Hb_025787_010 Hb_025787_010 Hb_007576_140--Hb_025787_010 Hb_007576_140--Hb_000567_090 Hb_052135_020 Hb_052135_020 Hb_129204_020--Hb_052135_020 Hb_129204_020--Hb_001221_580 Hb_004837_220 Hb_004837_220 Hb_129204_020--Hb_004837_220 Hb_002317_010 Hb_002317_010 Hb_129204_020--Hb_002317_010 Hb_002107_100 Hb_002107_100 Hb_129204_020--Hb_002107_100 Hb_158445_020 Hb_158445_020 Hb_129204_020--Hb_158445_020 Hb_002701_160 Hb_002701_160 Hb_003659_010--Hb_002701_160 Hb_001240_050 Hb_001240_050 Hb_003659_010--Hb_001240_050 Hb_003659_010--Hb_002235_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.630369 2.12239 4.90792 1.81298 1.06631 0.554905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.370233 1.22082 0.661202 4.78173 1.62194

CAGE analysis