Hb_001221_580

Information

Type -
Description -
Location Contig1221: 371703-376012
Sequence    

Annotation

kegg
ID rcu:RCOM_1505140
description hypothetical protein
nr
ID XP_012090654.1
description PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
swissprot
ID Q5XUX6
description RecQ-mediated genome instability protein 1 OS=Arabidopsis thaliana GN=RMI1 PE=1 SV=1
trembl
ID A0A067JF94
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26417 PE=4 SV=1
Gene Ontology
ID GO:0044763
description recq-mediated genome instability protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001221_580 0.0 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
2 Hb_004108_210 0.0916987074 - - phenazine biosynthesis protein, putative [Ricinus communis]
3 Hb_000098_150 0.0965867614 - - DNA helicase hus2, putative [Ricinus communis]
4 Hb_000890_160 0.1007509345 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
5 Hb_000567_090 0.1098748948 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
6 Hb_003428_090 0.1130777649 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
7 Hb_005903_020 0.1151819362 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
8 Hb_129204_020 0.118064363 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
9 Hb_080147_020 0.1192933776 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
10 Hb_002686_150 0.1195201342 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
11 Hb_001195_220 0.1200505078 - - sugar transporter, putative [Ricinus communis]
12 Hb_003687_120 0.1208951502 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
13 Hb_015778_040 0.1234169577 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
14 Hb_005144_210 0.1235320943 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000866_140 0.1260673327 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
16 Hb_008725_050 0.1268742006 - - syntaxin, putative [Ricinus communis]
17 Hb_002304_050 0.1302214567 - - pyruvate kinase, putative [Ricinus communis]
18 Hb_026198_010 0.1308714403 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
19 Hb_004837_220 0.131438898 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
20 Hb_011716_010 0.132391995 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_001221_580 Hb_001221_580 Hb_004108_210 Hb_004108_210 Hb_001221_580--Hb_004108_210 Hb_000098_150 Hb_000098_150 Hb_001221_580--Hb_000098_150 Hb_000890_160 Hb_000890_160 Hb_001221_580--Hb_000890_160 Hb_000567_090 Hb_000567_090 Hb_001221_580--Hb_000567_090 Hb_003428_090 Hb_003428_090 Hb_001221_580--Hb_003428_090 Hb_005903_020 Hb_005903_020 Hb_001221_580--Hb_005903_020 Hb_004108_210--Hb_000098_150 Hb_005144_210 Hb_005144_210 Hb_004108_210--Hb_005144_210 Hb_000296_010 Hb_000296_010 Hb_004108_210--Hb_000296_010 Hb_004108_210--Hb_005903_020 Hb_004712_190 Hb_004712_190 Hb_004108_210--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_000098_150--Hb_001863_160 Hb_000098_150--Hb_005144_210 Hb_000098_150--Hb_004712_190 Hb_014231_020 Hb_014231_020 Hb_000098_150--Hb_014231_020 Hb_006468_010 Hb_006468_010 Hb_000890_160--Hb_006468_010 Hb_008725_050 Hb_008725_050 Hb_000890_160--Hb_008725_050 Hb_000890_160--Hb_003428_090 Hb_003687_120 Hb_003687_120 Hb_000890_160--Hb_003687_120 Hb_000866_140 Hb_000866_140 Hb_000890_160--Hb_000866_140 Hb_010068_070 Hb_010068_070 Hb_000890_160--Hb_010068_070 Hb_080147_020 Hb_080147_020 Hb_000567_090--Hb_080147_020 Hb_052135_020 Hb_052135_020 Hb_000567_090--Hb_052135_020 Hb_086639_050 Hb_086639_050 Hb_000567_090--Hb_086639_050 Hb_000098_180 Hb_000098_180 Hb_000567_090--Hb_000098_180 Hb_001117_080 Hb_001117_080 Hb_000567_090--Hb_001117_080 Hb_003428_090--Hb_003687_120 Hb_060094_010 Hb_060094_010 Hb_003428_090--Hb_060094_010 Hb_003428_090--Hb_000866_140 Hb_000156_090 Hb_000156_090 Hb_003428_090--Hb_000156_090 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_006438_020 Hb_006438_020 Hb_005903_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_005903_020--Hb_007426_220 Hb_001232_090 Hb_001232_090 Hb_005903_020--Hb_001232_090 Hb_011716_010 Hb_011716_010 Hb_005903_020--Hb_011716_010 Hb_000926_060 Hb_000926_060 Hb_005903_020--Hb_000926_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.239395 0.995836 1.7526 1.08336 0.217263 0.235151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.24557 0.444396 0.292492 1.05391 0.366644

CAGE analysis