Hb_000296_010

Information

Type -
Description -
Location Contig296: 24615-28773
Sequence    

Annotation

kegg
ID rcu:RCOM_0030860
description hypothetical protein
nr
ID XP_012075274.1
description PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
swissprot
ID Q8LJT8
description TSL-kinase interacting protein 1 OS=Arabidopsis thaliana GN=TKI1 PE=1 SV=2
trembl
ID A0A067KGR2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09446 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30934: 25582-27661 , PASA_asmbl_30935: 26697-27630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000296_010 0.0 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
2 Hb_004108_210 0.1109648561 - - phenazine biosynthesis protein, putative [Ricinus communis]
3 Hb_000098_150 0.1198955217 - - DNA helicase hus2, putative [Ricinus communis]
4 Hb_002913_010 0.1285700819 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
5 Hb_000098_030 0.1291968898 - - MLO-like protein 4 [Gossypium arboreum]
6 Hb_005144_210 0.1410084668 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000940_050 0.1448544191 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
8 Hb_001221_580 0.1460815607 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
9 Hb_000260_770 0.1466759978 - - er lumen protein retaining receptor, putative [Ricinus communis]
10 Hb_000134_250 0.1466910762 - - protein with unknown function [Ricinus communis]
11 Hb_000679_110 0.1482540253 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
12 Hb_000678_010 0.1492049417 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
13 Hb_009659_030 0.1502880131 - - PREDICTED: beta-galactosidase 17 [Jatropha curcas]
14 Hb_000229_050 0.1512147946 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
15 Hb_008053_060 0.1518142694 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
16 Hb_001369_470 0.1530395508 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
17 Hb_007576_140 0.153570318 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
18 Hb_005725_230 0.1555011332 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
19 Hb_000890_160 0.1558332863 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
20 Hb_001195_220 0.1574265254 - - sugar transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000296_010 Hb_000296_010 Hb_004108_210 Hb_004108_210 Hb_000296_010--Hb_004108_210 Hb_000098_150 Hb_000098_150 Hb_000296_010--Hb_000098_150 Hb_002913_010 Hb_002913_010 Hb_000296_010--Hb_002913_010 Hb_000098_030 Hb_000098_030 Hb_000296_010--Hb_000098_030 Hb_005144_210 Hb_005144_210 Hb_000296_010--Hb_005144_210 Hb_000940_050 Hb_000940_050 Hb_000296_010--Hb_000940_050 Hb_004108_210--Hb_000098_150 Hb_004108_210--Hb_005144_210 Hb_001221_580 Hb_001221_580 Hb_004108_210--Hb_001221_580 Hb_005903_020 Hb_005903_020 Hb_004108_210--Hb_005903_020 Hb_004712_190 Hb_004712_190 Hb_004108_210--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_000098_150--Hb_001863_160 Hb_000098_150--Hb_005144_210 Hb_000098_150--Hb_001221_580 Hb_000098_150--Hb_004712_190 Hb_014231_020 Hb_014231_020 Hb_000098_150--Hb_014231_020 Hb_000678_010 Hb_000678_010 Hb_002913_010--Hb_000678_010 Hb_000229_050 Hb_000229_050 Hb_002913_010--Hb_000229_050 Hb_002235_050 Hb_002235_050 Hb_002913_010--Hb_002235_050 Hb_000742_010 Hb_000742_010 Hb_002913_010--Hb_000742_010 Hb_133004_010 Hb_133004_010 Hb_002913_010--Hb_133004_010 Hb_005725_230 Hb_005725_230 Hb_000098_030--Hb_005725_230 Hb_003050_260 Hb_003050_260 Hb_000098_030--Hb_003050_260 Hb_000883_170 Hb_000883_170 Hb_000098_030--Hb_000883_170 Hb_005539_340 Hb_005539_340 Hb_000098_030--Hb_005539_340 Hb_000098_030--Hb_005144_210 Hb_005144_210--Hb_004712_190 Hb_000703_160 Hb_000703_160 Hb_005144_210--Hb_000703_160 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_005144_210--Hb_014231_020 Hb_001824_030 Hb_001824_030 Hb_000940_050--Hb_001824_030 Hb_005649_100 Hb_005649_100 Hb_000940_050--Hb_005649_100 Hb_000139_220 Hb_000139_220 Hb_000940_050--Hb_000139_220 Hb_016448_010 Hb_016448_010 Hb_000940_050--Hb_016448_010 Hb_009659_030 Hb_009659_030 Hb_000940_050--Hb_009659_030 Hb_004096_160 Hb_004096_160 Hb_000940_050--Hb_004096_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.670245 1.09907 2.71406 0.88735 0.579471 0.396473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.500985 0.591238 0.206455 1.80698 0.367944

CAGE analysis